New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5647932 =	56 (0.970)	3 (0.050)	3/326	NT	5.8%	coding (192/453 nt)	elaA	putative acyltransferase
	?	AE015451	5648003 =	44 (0.800)					coding (263/453 nt)	elaA	putative acyltransferase

AAAACGCCTGTAAATGCGCCGGAGCCGACAGATAAACCGGCACCCCCGGCCAACAATGCTCCGCCGCTTCCAGCCCCTTGAGCAGCAAGCTTTCGTCGAGCTGCAAACCTCGCGCCTGCGGTGATGTCACCACTCGTCCGATCACCACATCCCCACCTTGTGACTGCGGATCCAGCAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5648113‑5647932 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggcgcGAGGTTTGCAGCTCGACGAAAGCTTGCTGCTCAAGGGGCTGGAAGCGGCGGAGCATTGTTGGCCGGGGGTGCCGGTTTATCTGTCGGCTCCGGCGCATTTACAGGCGTTTTATGCCCGCCATGGGTTTGCGGTGGTGGGCGAGGAGTTTTTGGAGGACGGCATCGCGTCCATTGGAATGCGCAAGGGATGAGCCCACCCTGTGCGGGCCGCACATCAGGGGTAACCCAGCACT  >  AE015451/5648003‑5648235                                                                                                                                                                                                                                                                                                                                                                                                                                 AAAACGCCTGTAAATGCGCCGGAGCCGACAGATAAACCGGCACCCCCGGCCAACAATGCTCCGCCGCTTCCAGCCCCTTGAGCAGCAAGCTTTCGTCGAGCTGCAAACCTCGCGCCTGCGGTGATGTCACCACTCGTCCGATCACCACATCCCCACCTTGTGACTGCGGATCCAG                                                                                                                                                                                                                                                  >  1:382879/1‑175                                                                                    AGCAAGCTTTCGTCGAGCTGCAACCCTCGCGCCTGCGGTGATGTCACCACTCGTCCGATCACCACATCCCCACCTTGTGACTGCGGATCCAGCAGGCGCGAGGTTTGCAGCTCGACG                                                                                                                                                                                                                         <  2:887019/117‑1                                                                                                                                                             CTTGTGACTGCGGATCCAGCAGGCGCGAGGTTTGCAGCTCGACGAAAGCT                                                                                                                                                                                                                   >  1:1074999/1‑50                                                                                                                                                             CTTGTGACTGCGGATCCAGCAGGCGCGAGGTTTGCAGCTCGACGAAAGCT                                                                                                                                                                                                                   <  2:1074996/50‑1                                                                                                                                                                                 AGGCGCGAGGTTTGCAGCTCGACGAAAGCTTGCTGCTCAAGGGGCTGGAAGCGGCGGAGCATTGTTGGCCGGGGGTGCCGGTTTATCTGTCGGCTCCGGCGCATTTACAGGCGTTTTATGCCCGCCATGGGTTTGCGGTGGTGGGCGAGGAGTTTTTGGAGGACGGCATCGCGTCCATTGGAATGCGCAAGGGATGAGCCCACCCTGTGCGGGCCGCACATCAGGGGTAACCCA       >  2:1019779/1‑234                                                                                                                                                                                    CGCGAGGTTTGCAGCTCGACGAAAGCTTGCTGCTCAAGGGGCTGGAAGCGGCGGAGCATTGTTGGCCGGGGGTGCCGGTTTATCTGTCGGCTCCGGCGCATTTACAGGCGTTTTATGCCCGCCATGGGTTTGCGGTGGTGGGCGAGGAGTTTTTGGAGGACGGCATCGCGTCCATTGGAATGCGCAAGGGATGAGCCCACCCTGTGCGGGCCGCACATCAGGGGTAACCCAGCACT  <  1:663624/236‑1                                                                                                                                                                                                                                                                                                                                                                                                                                 AAAACGCCTGTAAATGCGCCGGAGCCGACAGATAAACCGGCACCCCCGGCCAACAATGCTCCGCCGCTTCCAGCCCCTTGAGCAGCAAGCTTTCGTCGAGCTGCAAACCTCGCGCCTGCGGTGATGTCACCACTCGTCCGATCACCACATCCCCACCTTGTGACTGCGGATCCAGCAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5648113‑5647932 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggcgcGAGGTTTGCAGCTCGACGAAAGCTTGCTGCTCAAGGGGCTGGAAGCGGCGGAGCATTGTTGGCCGGGGGTGCCGGTTTATCTGTCGGCTCCGGCGCATTTACAGGCGTTTTATGCCCGCCATGGGTTTGCGGTGGTGGGCGAGGAGTTTTTGGAGGACGGCATCGCGTCCATTGGAATGCGCAAGGGATGAGCCCACCCTGTGCGGGCCGCACATCAGGGGTAACCCAGCACT  >  AE015451/5648003‑5648235

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.