New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 565578556 (0.970)3 (0.050) 3/326 NT 5.5% coding (1910/1998 nt) tktA transketolase A
?AE015451 = 5655842 50 (0.910)coding (1853/1998 nt) tktA transketolase A

GCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5655613‑5655785
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgactTCTGGTACAAGTACGTCGGCCTGGAAGGTCGTATCATCGGCATGACCACCTACGGTGAGTCGGCGCCGGCTTCGGCATTGTTCGAAGAGTTTGGCTTCACCCTGGAGAACATCCTCGGTACTGCCGAAGAGCTGCTGGAAGACTGATTTAAAGATCTGCGGGCGGTGTCGCCTTCATTCGCGGGCAAGCCCGCTCCCACAGAGGTTGCATGAAACCCTGTGGGAGCGGGCT  <  AE015451/5655842‑5655612
                                                                                                                                                                                                                                                                                                                                                                                                                    
GCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGA                                                                                                                                                                                                                                           <  1:702177/171‑1
  CCGCTCCCACATGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGC                                                                                                                                                                                                                                              <  1:375284/166‑1
                                     GCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCC                                                                                                                                                                                                                                             <  2:786645/132‑1
                                                                                                                      ATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTTCTGGTACAAGGACGTCGGCCTGGACGGTCGTCTCATCGGCATGACCACCTACGGTGAGTCGGCGCCGGCTTCG                                                                                                                                                               >  1:240369/1‑129
                                                                                                                             CCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACTTCTGGTACAAGTACGTCGGCCTGGAAGGTCGTATCATCGGCATGACCACCTACGGTGAGTCGGCGCCGGCTTCGGCATTGTTCGAAGAGTTTGGCTTCACCCTGGAGAACATCCTCGGTACTGCCGAAGAGCTGCTGGAAGACTGAGTTAAAGATCTGC                                                                          >  1:449409/1‑207
                                                                                                                                              TCTTCGAACAATGCCGAAGCCGGCACCGACTTCTGGTACAAGTACGTCGGCCTGGAAGGTCGTATCATCGGCATGACCACCTACGGTGAGTCGGCGCCGGCTTCGGCATTtg                                                                                                                                                        >  2:249677/1‑110
                                                                                                                                                                     CGCCGACTTCTGGTACAAGTACGTCGGCCTGGAAGGTCGTATCATCGGCATGACCACCTACGGTGAGTCGGCGCCGGCTTCGGCATTGTTCGAAGAGTTTGGCTTCACCCTGGAGAACATCCTCGGTACTGCCGAAGAGCTGCTGGAAGACTGATTTAAAGATCTGCGGGCGTTGT                                                                 >  2:399286/1‑176
                                                                                                                                                                         GACTTCTGGTACAAGTACGTCGGCCTGGAAGGTCGTATCATCGGCATGACCACCTACGGTGAGTCGGCGCCGGCTTCGGCATTGTTCGAAGAGTTTGGCTTCACCCTGGAGAACATCCTCGGTACTGCCGAAGAGCTGCTGGAAGACTGATTTAAAGATCTGCGGGCGGTGTCGCCTTCATTCGCGGGCAAGCCCGCTCCCCCAGAGGCTGCATGAAACCCTGTGTGAGCGGGCg  >  1:284713/1‑234
                                                                                                                                                                          ACTTCTGTTACAAGTACGTCGGCCTGGAAGGTCGTATCATCGGCATGACCACCTACGGTGAGTCGGCGCCGGCTTCGGCATTGTTCGAAGAGTTTGGCTTCACCCTGGAGAACATCCTCGGTACTGCCGAAGAGCTGCTGGAAGACTGATTTAAAGATCTGCGGGCGGTGTCGCCTTCATTCGCGGGCAAGCCCGCTCCCACAGAGGTTGCA                        <  1:86329/212‑1
                                                                                                                                                                                                                                                                                                                                                                                                                    
GCCCGCTCCCACAGGGTTTCATGCAACCTCTGTGGGAGCGGGCTTGCCCGCGAATGAAGGCGACACCGCCCGCAGATCTTTAAATCAGTCTTCCAGCAGCTCTTCGGCAGTACCGAGGATGTTCTCCAGGGTGAAGCCAAACTCTTCGAACAATGCCGAAGCCGGCGCCGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5655613‑5655785
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgactTCTGGTACAAGTACGTCGGCCTGGAAGGTCGTATCATCGGCATGACCACCTACGGTGAGTCGGCGCCGGCTTCGGCATTGTTCGAAGAGTTTGGCTTCACCCTGGAGAACATCCTCGGTACTGCCGAAGAGCTGCTGGAAGACTGATTTAAAGATCTGCGGGCGGTGTCGCCTTCATTCGCGGGCAAGCCCGCTCCCACAGAGGTTGCATGAAACCCTGTGGGAGCGGGCT  <  AE015451/5655842‑5655612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.