| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 5803660 | 54 (0.940) | 3 (0.050) | 3/326 | NT | 5.7% | coding (138/1017 nt) | PP_5081 | Type IV pili biogenesis protein |
| ? | AE015451 | = 5803676 | 47 (0.860) | coding (122/1017 nt) | PP_5081 | Type IV pili biogenesis protein | |||||
TGCTCACCTGCCTCTACATCGAGGCGTTCGACAAGCAAGCCATGTGCATGCCCCGACACTGCCAGCCGTTCAAGCAGGTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/5803421‑5803660‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcctgcCTGCCCTGTTACAGCAGCAGGCGCGGGAGGATGCCAGGCATGTCGAGTTGAACCAGCTGCAGGCAGCCAATGCAGCGCAGTTGGCCGAACTGGAGCGGCTGAAGGCTTTAGTGGTGATTGCCGAACAGCGGTTGCAAGAGGCGCACTGGTATCTGGCCGCCGGGGAGAGCATGAGCGACCTGCTTGAACGGCTGGCAGTGTCGGGGCATGCACATGGCTTGCTTGTCGAACG < AE015451/5803676‑5803445 TGCTCACCTGCCTCTACATCGAGGCGTTCGACAAGCAAGCCATGTGCATGCCCCGACACTGCCAGCCGTTCAAGCAGGTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCG < 1:609100/235‑1TGCTCACCTGCCTCTACATCGAGGCGTTCGACAAGCAAGCCATGTGCATGCCCCGACACTGCCAGCCGTTCAAGCAGGTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCCTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCG < 1:396958/235‑1 CTCACCTGCCTCTACATCGAGGCGTTCGACAAGCAAGCCATGTGCATGCCCCGACACTGCCAGCCGTTCAAGCAGGTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGC < 1:986529/232‑1 CCGACACTGCCAGCCGTTCAAGCAGGTCGCTCATGCTCTCCCCGGCGGCCAGCTACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCG < 1:699213/183‑1 CCGACACTGCCAGCCGTTCAAGCAGGTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCCACTCGACATGCCTGGCATCCTCCCGCGCCTGCgc > 2:119255/1‑188 GTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCG < 1:40565/158‑1 CTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCC > 2:537694/1‑156 GGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCCTGCCCTGTTACAGCAGCAGGCGCGGGAGGGTGCCAGGCATGTCGAGTTGAACCAGCTGCAt > 1:289176/1‑167 CAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCCTGCCCTGTTACAGCAGCAGGCGCGGGAGGATGCCCGGCATGTCGAGTTGAACCAGCTGCAGGCAGCCAATGCAGCGCAGTTGGCCGA > 2:44661/1‑131 AACTCGACATGCCTGGCATCCTCCCGCGCCTGC < 2:236509/33‑1 GCCTGGCATCCTCCCGCGCCTGCCTGCCCTGTTACAGCAGCAGGCGCGGGAGGATGCCAGGCATGTCGAGTTGAACCAGCTGCAGGCAGCCAATGCAGCGCAGTTGGCCGAACTGGAGCGGCTGAAGGCTTTAGTGGTGATTGCCGAACAGCGGTTGCAAGAGGCGCACTGGTATCTGGCCGCCGGGGAGAGCATGAGCGACCTGCTTGAACGGCTGGCAGTGTCGGGGCATGCA > 1:537960/1‑235 CGCCTGCCTGCCCTGTTACAGCAGCAGGCGCGGGAGGATGCCAGGCATGTCGAGTTGAACCAGCTGCAGGCAGCCAATGCAGCGCAGTTGGCCGAACTGGAGCGGCTGAAGGCTTTAGTGGTGATTGCCGAACAGCGGTTGCAAGAGGCGCACTGGTATCTGGCCGCCGGGGAGAGCATGAGCGACCTGCTTGAACGGCTGGCAGTGTCGGGGCATGCACATGGCTTGCTTGTCGA < 1:358369/236‑1 CTGCCTGCCCTGTTACAGCAGCAGGCGCGGGAGGATGCCAGGCATGTCGAGTTGAACCAGCTGCAGGCAGCCAATGCAGCGCAGTTGGCCGAACTGGAGCGGCTGAAGGCTTTAGTGGTGATTGCCGAACAGCGGTTGCAAGAGGCGCACTGGTATCTGGCCGCCGGGGAGAGCATGAGCGACCTGCTTGAAAGGCTGGCAGTGTCG > 1:261716/1‑207 CTGCCTGCCCTGTTACAGCAGCAGGCGCGGGAGGATGCCAGGCATGTCGAGTTGAACCAGCTGCAGGCAGCCAATGCAGCGCAGTTGGCCGAACTGGAGCGGCTGAAGGCTTTAGTGGTGATTGCCGAACAGCGGTTGCAAGAGGCGCACTGGTATCTGGC < 1:43643/161‑1 TGCCTGCCCTGTTACAGCAGCAGGCGCGGGAGGATGCCAGGCATGTCGAGTTGAACCAGCTGCAGGCAGCCAATGCAGCGCAGTTGGCCGAACTGGAGCGGCTGAAGGCTTTAGTGGTGATTGCCGAACAGCGGTTGCAAGAGGCGCACTGGTATCTGGCCGCCGGGGAGAGCATGAGCGACCTGCTTGAACGGC < 1:395802/195‑1 GCCTGCCCTGTTACAGCAGCAGGCGCGGGAGGATGCCAGGCATGTCGAGTTGAACCAGCTGCAGGCAGCCAATGCAGCGCAGTTGGCCGAACTGGAGCGGCTGAAGGCTTTAGTGGTGATTGCCGAACAGCGGTTGCAAGAGGCGCACTGGTATCTGGCCGCCGGGGAGAGCATGAGCGACCTGCTTGAACGGCTGGCAGTGTCGGGGCATGCACATGGCTTGCTTGTCGAACG < 2:676638/234‑1 TGCTCACCTGCCTCTACATCGAGGCGTTCGACAAGCAAGCCATGTGCATGCCCCGACACTGCCAGCCGTTCAAGCAGGTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/5803421‑5803660‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcctgcCTGCCCTGTTACAGCAGCAGGCGCGGGAGGATGCCAGGCATGTCGAGTTGAACCAGCTGCAGGCAGCCAATGCAGCGCAGTTGGCCGAACTGGAGCGGCTGAAGGCTTTAGTGGTGATTGCCGAACAGCGGTTGCAAGAGGCGCACTGGTATCTGGCCGCCGGGGAGAGCATGAGCGACCTGCTTGAACGGCTGGCAGTGTCGGGGCATGCACATGGCTTGCTTGTCGAACG < AE015451/5803676‑5803445 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |