New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5803660	54 (0.940)	3 (0.050)	3/326	NT	5.7%	coding (138/1017 nt)	PP_5081	Type IV pili biogenesis protein
	?	AE015451	= 5803676	47 (0.860)					coding (122/1017 nt)	PP_5081	Type IV pili biogenesis protein

CGTTCGACAAGCAAGCCATGTGCATGCCCCGACACTGCCAGCCGTTCAAGCAGGTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTCACGACCAGAACGCCGCAACACGAGCGGTGAGCAGAAACTCATCGCCGTCCGGCAGGCTCTTGATGCGCTTGAGCTCCAGATCGAGCAAAACGTTCGA  >  AE015451/5803445‑5803892                                                                                                                                                                                                                        |                                                                                                                                                                                                                                         cGTTCGACAAGCAAGCCATGTGCATGCCCCGACACTGCCAGCCGTTCAAGCAGGTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGgc                                                                                                                                                                                                                        <  2:676638‑M2/234‑3 (MQ=255) cGTTCGACAAGCAAGCCATGTGCATGCCCCGACACTGCCAGCCGTTCAAGCAGGTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTAGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGGTGTAACAg                                                                                                                                                                                                                               >  1:991897/1‑227 (MQ=255)    tCGACAAGCAAGCCATGTGCATGCCCCGACACTGCCAGCCGTTCAAGCAGGTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGgcaggcg                                                                                                                                                                                                                   <  1:358369‑M2/236‑8 (MQ=255)          agcaagcCATGTGCATGCCCCGACACTGCCAGCCGTTCAAGCAGGTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATcg                                                                                                                                                                                                              <  1:604518/235‑1 (MQ=255)                ccATGTGCATGCCCCGACACTGCCAGCCGTTCAAGCAGGTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGc                                                                                                                                                                                                        <  1:703078/235‑1 (MQ=255)                    gtgCATGCCCCGACACTGCCAGCCGTTCAAGCAGGTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAgg                                                                                                                                                                                                   <  1:655490/236‑1 (MQ=255)                     tgCATGCCCCGACACTGCCAGCCGTTCAAGCAGGTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGgcaggcgcgggaggatgccaggc                                                                                                                                                                                                   >  1:537960‑M2/1‑212 (MQ=255)                           ccccGACACTGCCAGCCGTTCAAGCAGGTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAggg                                                                                                                                                                                                                             <  2:809620/203‑1 (MQ=255)                           ccccGACACTGCCAGCCGTTCAAGCAGGTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGccc                                                                                                                                                                                                      <  1:237835/226‑1 (MQ=255)                             ccGACACTGCCAGCCGTTCAAGCAGGTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCCACTCGACATGCCTGGCATCCTCCCGCGCCTGCgc                                                                                                                                                                                                                                        >  2:119255‑M1/1‑188 (MQ=255)                              cGACACTGCCAGCCTTTCAAGCAGGTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGgcag                                                                                                                                                                                                                      >  1:261716‑M2/1‑203 (MQ=255)                                       cAGCCGTTCAAGCAGGTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGcgg                                                                                                                                                                                                >  1:129994/1‑218 (MQ=255)                                       cAGCCGTTCAAGCAGGTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGa                                                                                                                                                                                <  1:847090/236‑1 (MQ=255)                                         gCCGTTCAAGCAGGTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCctgctgct                                                                                                                                                                                                                                      >  1:44662/1‑180 (MQ=255)                                         gCCGTTCAAGCAGGTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGgca                                                                                                                                                                                                                       <  1:395802‑M2/195‑4 (MQ=255)                                                   cAGGTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGgcg                                                                                                                                                                    <  1:730572/236‑1 (MQ=255)                                                   cAGGTCGCTCATGCTCTCACCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGgcg                                                                                                                                                                    <  1:580167/236‑1 (MQ=255)                                                         gCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAAc                                                                                                                                                               >  1:423632/1‑235 (MQ=255)                                                          cTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAAc                                                                                                                                                               >  2:469384/1‑234 (MQ=255)                                                          cTCATGCGCCCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACa                                                                                                                                                                                                                                <  2:266378/169‑1 (MQ=255)                                                                     cccGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGc                                                                                                                                                  <  1:676641/236‑1 (MQ=255)                                                                      ccGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGaacaa                                                                                                                                                                                           >  2:862239/1‑194 (MQ=255)                                                                        ggcggcCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCt                                                                                                                                                >  1:1017102/1‑235 (MQ=255)                                                                        ggcggcCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTg                                                                                                                                               >  1:591425/1‑236 (MQ=255)                                                                        ggcggcCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCACAGCCTGAACAACACAACCGCGAt                                                                                                                                                                               >  1:95894/1‑204 (MQ=255)                                                                            gcCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGgcag                                                                                                                                                                                                                      <  1:43643‑M2/161‑5 (MQ=255)                                                                            gcCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGc                                                                                                                                                                                                        <  1:387018/175‑1 (MQ=255)                                                                                gATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAAc                                                                                                                                                                                                                                 >  2:604117/1‑146 (MQ=255)                                                                                         gcgcCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACa                                                                                                                                                                                                                                <  1:986486/138‑1 (MQ=255)                                                                                           gcCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGaa                                                                                                                                                                                              <  1:785590/170‑1 (MQ=255)                                                                                              tctTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAgg                                                                                                                                                                                                                              <  2:893161/135‑1 (MQ=255)                                                                                              tctTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCgccagc                                                                                                                           >  1:723461/1‑234 (MQ=255)                                                                                                ttGCAACCGCTGTTCGCCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTACCCGGGCAGGCCGGCGCCTCGCCCCGCCCAgcc                                                                                                                                                                                                  >  2:7217/1‑159 (MQ=255)                                                                                                gagCAACCTCTGTTCGGCAATCACCACGAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATc                                                                                                                                                                                                               <  2:292079/146‑1 (MQ=255)                                                                                                            ttCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAg                                                                                                                       >  2:793226/1‑224 (MQ=255)                                                                                                            ggcGGCAACCACTACGAAAGCCTGCAGCCGCTCCAGTGCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGc                                                                                                                                                                                  <  2:740924/163‑1 (MQ=255)                                                                                                               ggCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCctgccctgttacagcagcaggcgcgggagggtgccaggcatgtcgagttgaaccagctgcat                                                                                                                                                                            >  1:289176‑M1/1‑106 (MQ=255)                                                                                                               ggCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCa                                                                                                                                                                             >  2:964087/1‑167 (MQ=255)                                                                                                                              aGCCTGCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAg                                                                                                                   <  1:305919/210‑1 (MQ=255)                                                                                                                               gCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTCACGACCa                                                                                            <  1:899153/232‑1 (MQ=255)                                                                                                                                     aGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTCa                                                                                                  >  2:788399/1‑220 (MQ=255)                                                                                                                                       ccGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGa                                                                                                      <  2:1041999/214‑1 (MQ=255)                                                                                                                                             cAGTTCGGCCAAATGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTg                                                                                                             >  2:597744/1‑201 (MQ=255)                                                                                                                                                 tCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCGGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGgcaggcgcgggaggatgccaggcatgtcgagttgaaccagctg                                                                                                                                                                               >  2:44661‑M2/1‑88 (MQ=255)                                                                                                                                                        aCTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTCACGACCAGAAcgccgc                                                                                   >  1:358175/1‑216 (MQ=255)                                                                                                                                                                 cATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTCACGACCAGAACGCCGCAACACGAGCGGTGAGCAGAAACTCATCGc                                                      >  1:526595/1‑236 (MQ=255)                                                                                                                                                                       ctgcctgcAGCTGGTTCAACTCGACATGCCTGTCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGTCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCgcca                                                                                                                             <  1:41258/159‑1 (MQ=255)                                                                                                                                                                        tgcctgcAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTCACGACCAGAACGCCGCAACACGAGCGGTGAGCAGAAACTCATCGCCGTCCg                                                <  1:735475/235‑1 (MQ=255)                                                                                                                                                                         gcctgcAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTCACGACCAGAACGCCGCa                                                                                  >  1:55088/1‑200 (MQ=255)                                                                                                                                                                           atgcaGCTGGTTCAACTCGACATGCCTGGCACCCTCCCGCGCCTGCTGCTGTAACAGGGCAGgcaggcgcgggaggatgccaggcatgtcgagttgaaccagctgcaggcagccaatgcagcgcagttggccgaactggagcggctgaaggctttagtggtgattgcc                                                                                                                >  1:289176‑M2/2‑62 (MQ=255)                                                                                                                                                                              cAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCctgccctgttacagcagcaggcgcgggaggatgcccggcatgtcgagttgaaccagctgcaggcagccaatgcagcgcagttggccga                                                                                                                                                  >  2:44661‑M1/1‑43 (MQ=255)                                                                                                                                                                                   ggTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGCAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAg                                                                                                                       >  1:168903/1‑153 (MQ=255)                                                                                                                                                                                   ggTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTCACGACCAGAACGCCGCAACACGAGCGGTGAGCAGCAACTCATCGCCGTCCGGCAGGCTCTTg                                     >  1:170989/1‑235 (MQ=255)                                                                                                                                                                                    gTTCAACTCGACATGCCTGGCACCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTc                                                                                                   <  2:967309/172‑1 (MQ=255)                                                                                                                                                                                        aaCTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGACCAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCCCCGCCAGCCAAGCGAGCATCTGCGCTGGACTCACGAcccg                                                                                           >  2:210812/1‑174 (MQ=255)                                                                                                                                                                                        aaCTCGACATGCCTGGCATCCTCCCGCGCCTGC                                                                                                                                                                                                                                          <  2:236509‑M1/33‑1 (MQ=255)                                                                                                                                                                                                  gCCTGGCATCCTCCCGCGCCTGCctgccctgttacagcagcaggcgcgggaggatgccaggcatgtcgagttgaaccagctgcaggcagccaatgcagcgcagttggccgaactggagcggctgaaggctttagtggtgattgccgaacagcggttgcaagaggcgcactggtatctggccgccggggagagcatgagcgacctgcttgaacggctggcagtgtcggggcatgca                      >  1:537960‑M1/1‑23 (MQ=255)                                                                                                                                                                                                  gCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTCACGACCAGAACGCCGCAACACGAGCGGTGAGCAGAAACTCATCGc                                                      >  2:777280/1‑203 (MQ=255)                                                                                                                                                                                                     tGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTCACGACCAGAACGCCGCAACACGAGCGGTGAGCAGAAACTCATCGCCGTCCGGCAGGctc                                        >  1:261529/1‑214 (MQ=255)                                                                                                                                                                                                        cctccaccCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTCACGACCAGAAcgccg                                                                                    <  1:119257/165‑1 (MQ=255)                                                                                                                                                                                                          ccctccCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTCACGACCAGAACGCCGCAACACGAGCGGTGAGCAGAAACTCATCg                                                       <  2:798980/193‑1 (MQ=255)                                                                                                                                                                                                              gatgcgcCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTCACGACCAGAACGCCGCAACACGAGCGGTGAGCAGAAACTCATCGCCGTCCGGCAGGCTCTTGATGCGCTTGAGCTCCAGATCGAGCaaaa         >  1:291537/4‑236 (MQ=255)                                                                                                                                                                                                               ccGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTCACGACCAGAACGCCGCAACACGAGCGGTGAGCAGaaa                                                              >  2:480300/1‑182 (MQ=255)                                                                                                                                                                                                               ccGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTCACGACCAGAACGCCGCAACACGAGCGGTGAGCAGAAACTCATCGCCGTCCGGCAGGCTCtt                                      >  1:712013/1‑206 (MQ=255)                                                                                                                                                                                                               ccGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTCACGACCAGAACGCCGCAACACGAGCGGTGAGCAGAAACTCATCGCCGTCCGGCAGGCTCTTGATGCGCTTGAGCTCCAGATCGAGCAAAAc        >  1:910415/1‑236 (MQ=255)                                                                                                                                                                                                                cgcgCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGTGCAGCCCAGGCTGAACCACACAACAGCg                                                                                                                                                                                 >  2:900440/1‑66 (MQ=255)                                                                                                                                                                                                                  cgcCTGCctgccctgttacagcagcaggcgcgggaggatgccaggcatgtcgagttgaaccagctgcaggcagccaatgcagcgcagttggccgaactggagcggctgaaggctttagtggtgattgccgaacagcggttgcaagaggcgcactggtatctggccgccggggagagcatgagcgacctgcttgaacggctggcagtgtcggggcatgcacatggcttgcttgtcga     <  1:358369‑M1/236‑230 (MQ=255)                                                                                                                                                                                                                   gcCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTCACGACCAGAACGCCGCAACACGAGCGGTGAGCAGAAACTCATCGCCGTCCGGCAGGCTCTTGATGCGCTTGAGCTCCAGATCGAGCAAAACGtt     <  1:279166/235‑1 (MQ=255)                                                                                                                                                                                                                   gcCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTCACGACCAGAACGCCGCAACACGAGCGGTGAGCAGAAACTCATCGCCGTCCGGCAGGCTCTTGATGCGCTTGAGCTCCAGATCGAGCAAAACGTTc    <  1:619474/236‑1 (MQ=255)                                                                                                                                                                                                                     ctgcctgccctgttacagcagcaggcgcgggaggatgccaggcatgtcgagttgaaccagctgcaggcagccaatgcagcgcagttggccgaactggagcggctgaaggctttagtggtgattgccgaacagcggttgcaagaggcgcactggtatctggccgccggggagagcatgagcgacctgcttgaaaggctggcagtgtcg                               >  1:261716‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                     ctgcctgccctgttacagcagcaggcgcgggaggatgccaggcatgtcgagttgaaccagctgcaggcagccaatgcagcgcagttggccgaactggagcggctgaaggctttagtggtgattgccgaacagcggttgcaagaggcgcactggtatctggc                                                                             <  1:43643‑M1/161‑158 (MQ=255)                                                                                                                                                                                                                      tgcctgccctgttacagcagcaggcgcgggaggatgccaggcatgtcgagttgaaccagctgcaggcagccaatgcagcgcagttggccgaactggagcggctgaaggctttagtggtgattgccgaacagcggttgcaagaggcgcactggtatctggccgccggggagagcatgagcgacctgcttgaacggc                                          <  1:395802‑M1/195‑193 (MQ=255)                                                                                                                                                                                                                       gcctgccctgttacagcagcaggcgcgggaggatgccaggcatgtcgagttgaaccagctgcaggcagccaatgcagcgcagttggccgaactggagcggctgaaggctttagtggtgattgccgaacagcggttgcaagaggcgcactggtatctggccgccggggagagcatgagcgacctgcttgaacggctggcagtgtcggggcatgcacatggcttgcttgtcgaacg  <  2:676638‑M1/234‑233 (MQ=255)                                                                                                                                                                                                                        |                                                                                                                                                                                                                                         CGTTCGACAAGCAAGCCATGTGCATGCCCCGACACTGCCAGCCGTTCAAGCAGGTCGCTCATGCTCTCCCCGGCGGCCAGATACCAGTGCGCCTCTTGCAACCGCTGTTCGGCAATCACCACTAAAGCCTTCAGCCGCTCCAGTTCGGCCAACTGCGCTGCATTGGCTGCCTGCAGCTGGTTCAACTCGACATGCCTGGCATCCTCCCGCGCCTGCTGCTGTAACAGGGCAGGCAGGCGCATCGCGCAGCCCAGGCTGAACAACACAACAGCGATCAGCGCTGGCGCCAACCATCGGAAGCGGCCTGAGCCCTCGACCACCGCCAGCCAAGCGAGCATCTGCGCTGGACTCACGACCAGAACGCCGCAACACGAGCGGTGAGCAGAAACTCATCGCCGTCCGGCAGGCTCTTGATGCGCTTGAGCTCCAGATCGAGCAAAACGTTCGA  >  AE015451/5803445‑5803892

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.