New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5999458 =	32 (0.560)	4 (0.070)	4/324	NT	10.6%	intergenic (‑313/‑8)	ycaC‑IV/PP_5256	putative hydrolase/Cyclic nucleotide‑binding protein
	?	AE015451	5999593 =	37 (0.680)					coding (128/1428 nt)	PP_5256	Cyclic nucleotide‑binding protein

CCATCAGGTTGCGCGAGACATCGTCGGGCCACGGCGGTGGTTGCAGCGGGCTCATGCCAGCGGCCATCAGCACTGAGCTGAACAGCAGGAAGATCACCAGGCGCGCGCTGATGCGCCAGGCATGGCGCTGAATGGGGATCAGTTGCCAAAGCACGAGGTCGAGCAGGATCAAGGCGCAACCGAGCAACAACGGGGACGACTGGATGAACGCCAGCATGGTGATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5999682‑5999458 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtgatctTCCTGCTGTTCAGCTCAGTGCTGATGGCCGCTGGCATGAGCCCGCTGCAACCACCGCCGTGGCCCGACGATGTCTCGCGCAACCTGATGGCCACGGTATTGGCCATCGGCTGGTGGCTGTTCGGTGCGCGCACGGTAACCGTGGTATTCGGCCTGTTGCTGGTGGCCCGTGGCAGCCATGGCGGGCGCTTGCTGCAGGATGTGCTGGGGGCGTTGATCTTCCTCGCCGCCGTGG  >  AE015451/5999593‑5999826                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCATCAGGTTGCGCGAGACATCGTCGGGCCACGGCGGTGGTTGCAGCGGGCTCATGCCAGCGGCCATCAGCACTGAGCTGAACAGCAGGAAGATCACCAGGCGCGCGCTGATGCGCCAGGCATGGCGCTGAATGGGGATCAGTTGCCAAAGCACGAGGTCGAGCAGGATCAAGGCGCAACCGAGCAACAACGGGGACGACTGGATGAACGCCAGCATGGT                                                                                                                                                                                                                                                 >  2:941334/1‑220                                                                                                            CTGATGCTCCAGGCATGGCGCTGAATGGGGATCAGTTGCCAAAGCACTAGGTCGTTCAGGATCAAGGCGCAACCGAGCAACAACGGGGACGACTGGATGAACGCCAGCAT                                                                                                                                                                                                                                                    <  2:1087519/110‑1                                                                                                                                                                     AGGATCAAGGCGCAACCGAGCAACAACGGGGACGACTGGATGAACGCCAGCATGGTGATCTTCCTGCTGTTCAGCTCAGTGCTGATGGCCGCTGGCATGAGCCCGCTGCAGCCACCGCCGTGGCCCGA                                                                                                                                                                         >  2:97294/1‑128                                                                                                                                                                                    CCGAGCAACAACGGGGACGACTGGATGAACGCCAGCATGGTGATCTTCCTGCTGTTCAGCTCAGTGCTGATGGCCGCTGGCATGAGCCCGCTGCAACCACCGCCGTGGCCCGACGATGTCTCGCGCAACCTGATGGCCACGGTATTGGCCATCGGCTGGTGGCTGTTCGGTtc                                                                                                             >  1:400291/1‑171                                                                                                                                                                                                                   CCAGCATGGTGATCTTCCTGCTGTTCAGCTCAGTGCTGATGGCCGCTGGCATGAGCCCGCTGCAACCACCGCCGTGGCCCGACGATGTCTCGCGCAACCTGATGGCCACGGTATTGGCCATCGGCTGGTGGCTGTTCGGTGCGCGCACGGTAACCGTGGTATTCGGCCTGTTGCTGGTGGCCCGTGGCAGCCATGGCGGGCGCTTGCTGC                                         <  1:670010/210‑1                                                                                                                                                                                                                   CCAGCATGGTGATCTTCCTGCTGTTCAGCTCAGTGCTGATGGCCGCTGGCATGAGCCCGCTGCAACCACCGCCGTGGCCCGACGATGTCTCGCGCAACCTGATGGCCACGGTATTGGCCATCGGCTGGTGGCTGTTCGGTGCGCGCACGGTAACCGTGGTATTCGGCCTGTTGCTGGTGGCCCGTGGCAGCCATGGCGGGCGCTTGCTGC                                         >  2:670007/1‑210                                                                                                                                                                                                                           GTGATCTTCCTGCTGTTCAGCTCAGTGCTGATGGCCGCTGGCATGAGCCCGCTGCAACCACCGCCGTGGCCCGACGATGTCTCGCGCAACCTGATGGCCACGGTATTGGCCATCGGCTGGTGGCTGTTCGGTGCGCGCACGGTAACCGTGGTATTCGGCCTGTTGCTGGTGGCCCGTGGCAGCCATGGCGGG                                                   <  1:1081701/192‑1                                                                                                                                                                                                                                CTTCCTGCTGTTCAGCTCAGTGCTGATGGCCGCTGGCATGAGCCCGCTGCAACCACCGCCGTGGCCCGACGATGTCTCGCGCAACCTGATGGCCACGGTATTGGCCATCGGCTGGTGGCTGTTCGGTGCGCGCACGGTAACCGTGGTATTCGGCCTGTTGCTGGTGGCCCGTGGCAGCCATGGCGGGCGCTTGCTGCAGGATGTGCTGGGGGCGTTGATCTTCCTCGCCGCCGTGG  <  1:592000/236‑1                                                                                                                                                                                                                                CTTCCTGCTGTTCAGCTCAGTGCTGATGGCCGCTGGCATGAGCCCGCTGCAACCACCGCCGTGGCCCGACGATGTCTCGCGCAACCTGATGGCCACGGTATTGGCCATCGGCTGGTGGCTGTTCGGTGCGCGCACGGTAACCGTGGTATTCGGCCTGTTGCTGGTGGCCCGTGGCAGCCATGGCGGGCGCTTGCTGCAGGATGTGCTGGGGGCGTTGATCTTCCTCGCCGCCGTGG  <  1:927433/236‑1                                                                                                                                                                                                                                 TTCCTGCTGTTCAGCTCAGTGCTGATGGCCGCTGGCATGAGCCCGCTGCAACCACCGCCGTGGCCCGACGATGTCTCGCGCAACCTGATGGCCACGGTATTGGCCTTCGGCTGGTGGCTGTTCGGTGCGCGCACGGTAACCGTGGTATTCGGCCTGTTGCTGGTGGCCCGTGGCAGCCATGGCGGGCGCTT                                              >  1:657253/1‑191                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCATCAGGTTGCGCGAGACATCGTCGGGCCACGGCGGTGGTTGCAGCGGGCTCATGCCAGCGGCCATCAGCACTGAGCTGAACAGCAGGAAGATCACCAGGCGCGCGCTGATGCGCCAGGCATGGCGCTGAATGGGGATCAGTTGCCAAAGCACGAGGTCGAGCAGGATCAAGGCGCAACCGAGCAACAACGGGGACGACTGGATGAACGCCAGCATGGTGATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5999682‑5999458 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtgatctTCCTGCTGTTCAGCTCAGTGCTGATGGCCGCTGGCATGAGCCCGCTGCAACCACCGCCGTGGCCCGACGATGTCTCGCGCAACCTGATGGCCACGGTATTGGCCATCGGCTGGTGGCTGTTCGGTGCGCGCACGGTAACCGTGGTATTCGGCCTGTTGCTGGTGGCCCGTGGCAGCCATGGCGGGCGCTTGCTGCAGGATGTGCTGGGGGCGTTGATCTTCCTCGCCGCCGTGG  >  AE015451/5999593‑5999826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.