New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5999458 =	32 (0.560)	4 (0.070)	4/324	NT	10.6%	intergenic (‑313/‑8)	ycaC‑IV/PP_5256	putative hydrolase/Cyclic nucleotide‑binding protein
	?	AE015451	5999593 =	37 (0.680)					coding (128/1428 nt)	PP_5256	Cyclic nucleotide‑binding protein

TTGGAGCGGTAGATAGTGGTTTTTGCCTTTAGCGTTCTGTTTTAGGAACGATAGATTGGCGTTGGTTTTGCTGGCCTCTTCGCGGGCACGCCCGTTCCCACAGGGATCGCACAAGATTCAAAACCAGCGCTTTACCTGTGGGAACGGGCAAGTCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATCCTGCTCGACCTCGTGCTTTGGCAACTGATCCCCATTCAGCGCCATGCCTGGCGCATCAGCGCGCGCCTGGTGATCTTCCTGCTGTTCAGCTCAGTGCTGATGGCCGCTGGCATGAGCCCGCTGCAACCACCGCCGTGGCCCGACGATGTCTCGCGCAACCTGATGGCCACGG  >  AE015451/5999224‑5999688                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                       ccacggcggcgaggaagatcaacgcccccagcacatcctgcagcaagcgcccgccatggctgccacgggccaccagcaacaggccgaataccacggttaccgtgcgcgcaccgaacagccaccagccgatggccaataccgtggccatcaggttgcgcgagacatcgtcgggccacggcggtggttgcagcgggctcatgccagcggccatcagcactgagctgaacagcaggaAg                                                                                                                                                                                                                                       <  1:927433‑M1/2‑1 (MQ=255) ccacggcggcgaggaagatcaacgcccccagcacatcctgcagcaagcgcccgccatggctgccacgggccaccagcaacaggccgaataccacggttaccgtgcgcgcaccgaacagccaccagccgatggccaataccgtggccatcaggttgcgcgagacatcgtcgggccacggcggtggttgcagcgggctcatgccagcggccatcagcactgagctgaacagcaggaAg                                                                                                                                                                                                                                       <  1:592000‑M1/2‑1 (MQ=255)            gATAGTGGTTTTTGCCTTTAGCGTTCTGTTTTAGGAACGATAGATTGGCGTTGGTTTTGCTGGCCTCTTCGCGGGCACGCCCGTTCCCACAGGGATCGCACAAGATTCAAAACCAGCGCTTTACCTGTGGGAACGGGCAAGTCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTTCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCCAGATCACCATGCt                                                                                                                                                                                                                            >  1:97217/1‑236 (MQ=255)            gATAGTGGTTTTTGCCTTTAGCGTTCTGTTTTAGGAACGATAGATTGGCGTTGGTTTTGCTGGCCTCTTCGCGGGCACGCCCGTTCCCACAGGGATCGCACAAGATTCAAAACCAGCGCTTTACCTGTGGGAACGGGCAAGTCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCt                                                                                                                                                                                                                            >  1:74794/1‑236 (MQ=255)                                        gcagcaagcgcccgccatggctgccacgggccaccagcaacaggccgaataccacggttaccgtgcgcgcaccgaacagccaccagccgatggccaataccgtggccatcaggttgcgcgagacatcgtcgggccacggcggtggttgcagcgggctcatgccagcggccatcagcactgagctgaacagcaggaAGATCACCATGCTgg                                                                                                                                                                                                                          >  2:670007‑M1/196‑210 (MQ=255)                                        gcagcaagcgcccgccatggctgccacgggccaccagcaacaggccgaataccacggttaccgtgcgcgcaccgaacagccaccagccgatggccaataccgtggccatcaggttgcgcgagacatcgtcgggccacggcggtggttgcagcgggctcatgccagcggccatcagcactgagctgaacagcaggaAGATCACCATGCTgg                                                                                                                                                                                                                          <  1:670010‑M1/15‑1 (MQ=255)                                             aagcgcccgccatggctgccacgggccaccagcaacaggccgaataccacggttaccgtgcgcgcaccgaacagccaccagccgaaggccaataccgtggccatcaggttgcgcgagacatcgtcgggccacggcggtggttgcagcgggctcatgccagcggccatcagcactgagctgaacagcaggaa                                                                                                                                                                                                                                        >  1:657253‑M1/191‑191 (MQ=255)                                              gAACGATAGATTGGCGTTGGTTTTGCTGGCCTCTTCGCGGGCACGCCCGTTCCCACAGGGATCGCACAAGATTCAAAACCAGCGCTTTACCTGTGGGAACGGGCAAGTCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCgg                                                                                                                                                                                           <  1:10808/235‑1 (MQ=255)                                                  cccgccatggctgccacgggccaccagcaacaggccgaataccacggttaccgtgcgcgcaccgaacagccaccagccgatggccaataccgtggccatcaggttgcgcgagacatcgtcgggccacggcggtggttgcagcgggctcatgccagcggccatcagcactgagctgaacagcaggaAGATCAc                                                                                                                                                                                                                                  <  1:1081701‑M1/7‑1 (MQ=255)                                                            cGTTGGTTTTGCTGGCCTCTTCGCGGGCACGCCCGTTCCCACAGGGATCGCACAAGATTCAAAACCAGCGCTTTACCTGTGGGAACGGGCAAGTCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTgg                                                                                                                                                                                                                          >  1:600384/1‑190 (MQ=255)                                                                              ctTCGCGGGCACGCCCGTTCCCACAGGGATCGCACAAGATTCAAAACCAGCGCTTTACCTGTGGGAACGGGCAAGTCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTg                                                                                                                                                                                                                           >  1:955966/1‑171 (MQ=255)                                                                               ttCGCGGGCACGCCCGTTCCCACAGGGATCGCACAAGATTCAAAACCAGCGCTTTACCTGTGGGAACGGGCAAGTCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATCCTGCTCGACCTCGTGCttt                                                                                                                                                           <  1:806986/234‑1 (MQ=255)                                                                                 cgcgGGCACGCCCGTTCCCACAGGGATCGCACAAGATTCAAAACCAGCGCTTTACCTGTGGGAACGGGCAAGTCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATCCTGCTCGACCTCGTGCTTTGGCa                                                                                                                                                       <  1:363859/236‑1 (MQ=255)                                                                                        aCGCCCGTTCCCACAGGGATCGCACAAGATTCAAAACCAGCGCTTTACCTGTGGGAACGGGCAAGTCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCgg                                                                                                                                                                                           >  2:834533/1‑193 (MQ=255)                                                                                        aCGCCCGTTCCCACAGGGATCGCACAAGATTCAAAACCAGCGCTTTACCTGTGGGAACGGGCAAGTCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCgg                                                                                                                                                                                           <  1:834536/193‑1 (MQ=255)                                                                                               ttCCCACAGGGATCGCACAAGATTCAAAACCAGCGCTTTACCTGTGGGAACGGGCAAGTCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCg                                                                                                                                                                                                      <  1:853073/175‑1 (MQ=255)                                                                                                           tCGCACAAGATTCAAAACCAGCGCTTTACCTGTGGGAACGGGCAAGTCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGCTGCCCg                                                                                                                                                                                            >  2:199522/1‑173 (MQ=255)                                                                                                            gaaccgaacagccaccagccgatggccaataccgtggccatcaggttgcgcgagacatcgtcgggccacggcggtggttgcagcgggctcatgccagcggccatcagcactgagctgaacagcaggaAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCgg                                                                                                                                                                                           >  1:400291‑M1/128‑173 (MQ=255)                                                                                                             gCACAAGATTCAAAACCAGCGCTTTACCTGTGGGAACGGGCAAGTCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAgtcg                                                                                                                                                                                                            >  1:656537/1‑155 (MQ=255)                                                                                                             gCACAAGATTCAAAACCAGCGCTTTACCTGTGGGAACGGGCAAGTCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAgtcg                                                                                                                                                                                                            <  2:656534/155‑1 (MQ=255)                                                                                                               acaAGATTCAAAACCAGCGCTTTACCTGTGGGAACGGGCAAGTCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATCCTGCTCGACCTCGTGCTTTGGCAACt                                                                                                                                                    >  1:155162/1‑209 (MQ=255)                                                                                                                     ttCAAAACCAGCGCTTTACCTGTGGGAACGGGCAAGTCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATCCTGCTCGACCt                                                                                                                                                                   >  1:977425/1‑188 (MQ=255)                                                                                                                                              gAACGGGCAAGTCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATCCTGCTCGACCTCGTGCTTTGGCAACTGATCCCCATTCAGCGCCATGCCTGGCGCATCAgcgc                                                                                                                >  1:226633/1‑214 (MQ=255)                                                                                                                                                     cacgTCGCGAAGGTGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATCCTGCTCGa                                                                                                                                                                      <  2:154935/150‑1 (MQ=255)                                                                                                                                                                 gggCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCGCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGc                                                                                                                                                                                               >  2:1048570/1‑116 (MQ=255)                                                                                                                                                                      aGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCCCCCCCGCGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGttgttg                                                                                                                                                                                                >  2:45199/1‑110 (MQ=255)                                                                                                                                                                      aGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATCCTGCTCGACCTCGTGCTTTGGCAACTGATCCCCATTCAGCGCCATGCCTGGCGCATCAGCGCGCGCCTGGTGATCTTCCTGCTGTTCAGCTCAGTGCTGATGGCCGCt                                                                  >  1:237463/1‑236 (MQ=255)                                                                                                                                                                        tcgggccacggcggtggctgcagcgggctcatgccagcggccatcagcactgagctgaacagcaggaAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATCCt                                                                                                                                                                            >  2:97294‑M1/68‑128 (MQ=255)                                                                                                                                                                           aGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATCCTGCTCGACCTCGTGCTTTGGCAACTGATCCCCATTCAGCGCCATGCCTGGCGCATCAGCGCGCGCCTGGTGATCTTCCTGCTGTTCAGCTCAGTGCTGATGGCCGCTGGCAt                                                             >  1:941337/1‑236 (MQ=255)                                                                                                                                                                                tGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCgttgtt                                                                                                                                                                                                 <  2:292313/99‑1 (MQ=255)                                                                                                                                                                                tGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCgttgtt                                                                                                                                                                                                 >  1:292316/1‑99 (MQ=255)                                                                                                                                                                                          gcctgGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATCCTGCTCGACCTCGTGCTTTGGCAACTGATCCCCATTCAGCGCCATGCCTGGCGCATCAGCGCGCGCCGGGTGAt                                                                                                    >  2:995276/1‑182 (MQ=255)                                                                                                                                                                                                    ccTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATCCTGCTCGAc                                                                                                                                                                     <  2:743098/107‑1 (MQ=255)                                                                                                                                                                                                    ccTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATCCTGCTCGAc                                                                                                                                                                     >  1:743101/1‑107 (MQ=255)                                                                                                                                                                                                     cTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAgt                                                                                                                                                                                                              <  2:110542/65‑1 (MQ=255)                                                                                                                                                                                                                      ccaGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATCCTGCTCGACCTCGTGCTTTGGCAACTGATCCCCATTCAGCGCCATGCCTGGCGCATCAGCGCGCGCCt                                                                                                          <  2:318218/147‑1 (MQ=255)                                                                                                                                                                                                                        aGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATCCTGCTCGACCTCGTGCTTTGGCAACTGATCCCCCTTCAGCGCCATGCCTGgc                                                                                                                          >  1:51312/1‑130 (MQ=255)                                                                                                                                                                                                                                cctcACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATCCTGCTCGACCTCGTGCTTTGGCAACTGATCCCCATTCAGCGCCATGCCTGGCGCATCAGCGCGCGCCTGGTGATCTTCCTGCTGTTCAGCTCAGTGCTGATGGCCGCTGGCATGAGCCCGCTGCAACCACCGCCGTGGccc                                 >  2:684691/1‑211 (MQ=255)                                                                                                                                                                                                                                  ccACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATCCTGCTCGACCTCGTGCTTTGGCAACTGATCCCCATTCAGCGCCATGCCTGGCGCATCAGCGCGCGCCTGGTGATCTTCCTGCTGTTCAGCTCAGTGCTGATGGCCGCTGGCATGAGCCCGCTGCAACCAccg                                          <  2:748548/199‑1 (MQ=255)                                                                                                                                                                                                                                     cccccGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATCCTGCTCGACCTCGTGCTTTGGCAACTGATCCCCATTCAGCGCCATGCCTGGCGCATCAGCGCGCGCCTGGTGATCTTCCTGCTGTTCAGCTCAGTGCTGATGGCCGCTGGCATGAGCCCGCTGCAACCACCGCCGTGGCCCGACGATGTCTCGCGCAACCTGATGGCCACg   >  1:847478/1‑236 (MQ=255)                                                                                                                                                                                                                                     ccaccGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATCCt                                                                                                                                                                            <  2:36889/64‑1 (MQ=255)                                                                                                                                                                                                                                      ccccGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATCCTGCTCGACCTCGTGCTTTGGCAACTGATCCCCATTCAGCGCCATGCCTGGCGCATCAGCGCGCGCCTGGTGATCTTCCTGCTGTTCAGCTCAGTGCTGATGGCCGCTGGCATGAGCCCGCTGCAACCACCGCCGTGGCCCGACGATGTCTCGCGCAACCTGAt          <  2:545723/228‑1 (MQ=255)                                                                                                                                                                                                                                       cccGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATCCTGCTCGACCTCGTGCTTTGGCAACTGATCCCCATTCAGCGCCATGCCTGGCGCATCAGCGCGCGCCTGGTGATCTTCCTGCTGTTCAGCTCAGTGCTGATGGCCGCTGGCATGAGCCCGCTGCAACCACCGCCGTGGCCCGACGATGTCTCGCGCAACCTGATGGCCACgg  >  1:72004/1‑235 (MQ=255)                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                       TTGGAGCGGTAGATAGTGGTTTTTGCCTTTAGCGTTCTGTTTTAGGAACGATAGATTGGCGTTGGTTTTGCTGGCCTCTTCGCGGGCACGCCCGTTCCCACAGGGATCGCACAAGATTCAAAACCAGCGCTTTACCTGTGGGAACGGGCAAGTCGCGAAGGGGCCAGCACAGGCTTGCATTGCCTGCCTGGCAAACCTGCTCTATTACTACCCACAGCCCTCCCCTCACCCCCGAGATCACCATGCTGGCGTTCATCCAGTCGTCCCCGTTGTTGCTCGGTTGCGCCTTGATCCTGCTCGACCTCGTGCTTTGGCAACTGATCCCCATTCAGCGCCATGCCTGGCGCATCAGCGCGCGCCTGGTGATCTTCCTGCTGTTCAGCTCAGTGCTGATGGCCGCTGGCATGAGCCCGCTGCAACCACCGCCGTGGCCCGACGATGTCTCGCGCAACCTGATGGCCACGG  >  AE015451/5999224‑5999688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.