New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2087730 =	26 (0.450)	4 (0.070)	4/328	NT	9.9%	intergenic (+543/+375)	PP_1865/aroH	transposase/Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase
	?	AE015451	2256224 =	48 (0.870)					intergenic (+284/‑420)	asd/PP_1990	Aspartate‑semialdehyde dehydrogenase/transposase

ATGCATTCGGCGAGGTTCTGCCCGGTCATCTGGATAAGGATATCGCCGGCATGGCTGCCCTCGGCCTGGTGTACCTGGAAGAACGCCGTTGCTCTTGCTCTTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGAATGAATGTCTACTTGATGCGAAAGCGCACAACCCAAAAGCCCAAAAGCCCAAAAGCCCAAAAGCCCAAAAGCC  >  AE015451/2087495‑2087965                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                            aTGCATTCGGCGAGGTTCTGCCCGGTCATCTGGATAAGGATATCGCCGGCATGGCTGCCCTCGGCCTGGTGTACCTGGAAGAACGCCGTTGCTCTTGCTCTTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCACGTCTAGCGCTG‑GGCCCCA‑GGAt                                                                                                                                                                                                                                             >  1:741270/1‑236 (MQ=255)         cttcttgcttcttgcttcttgcttcttggatgtgggcattcacaccgagtaggtattcattcacgcaggtggcgcatagtcacctttccgcccttacggcgggtccctttttgtcgtggcaaaaaggaaccaaaaaccgtcggctcccatcatccggcccctgcgctacgctccggggtcccctcgctccgggcttgctcccgggaggaccgcgctgcaggccccatccTGGGGcc                                                                                                                                                                                                                                       >  1:60334‑M1/230‑236 (MQ=255)            gAGGTTCTGCCCGGTCATCTGGATAAGGATATCGCCGGCATGGCTGCCCTCGGCCTGGTGTACCTGGAAGAACGCCGTTGCTCTTGCTCTTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCa                                                                                                                                                                                                                                   >  1:963555/1‑235 (MQ=255)                                                    tGGCTGCCCTCGGCCTGGTGTACCTGGAAGAACGCCGTTGCTCTTGCTCTTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCg                                                                                                                                                                                                         >  2:877215/1‑221 (MQ=255)                                                    tGGCTGCCCTCGGCCTGGTGTACCTGGAAGAACGCCGTTGCTCTTGCTCTTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGAGGGGGCCTGCAGCGCGGTCCTCCCGGGGGCAAGCCCGGCGTGAGGGGAcccc                                                                                                                                                                                          >  1:204386/1‑236 (MQ=255)                                                       gagtaggtattcattcacgcaggtggcgcatagtcacctttccgcccttacggcgggtccctttttgtcgtggcaaaaaggaaccaaaaaccgtcggctcccatcatccggcccctgcgctacgctccggggtcccctcgctccgggcttgctcccgggaggaccgcgctgcaggccccatccTGGGGcc                                                                                                                                                                                                                                       >  1:609735‑M1/184‑190 (MQ=255)                                                                                   aCGCCGTTGCTCTTGCTCTTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGCCGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCa                                                                                                                                                                                                                                   >  1:1034589/1‑164 (MQ=255)                                                                                                              ctTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGa                                                                                                                                                            >  1:9106/1‑208 (MQ=32)                                                                                                                ttGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GAATGGGGCCTGCCGCGCGGTCATCCCGGGAGCAAGCCCgg                                                                                                                                                                                                        >  2:1041283/1‑162 (MQ=9)                                                                                                                       ttGCTTCTACGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGAc                                                                                                                                                      <  1:819567/205‑1 (MQ=18)                                                                                                                              tAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGcc                                                                                                                                                                       >  1:640479/1‑181 (MQ=31)                                                                                                                              tAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGatgatg                                                                                                                                                               >  2:980650/1‑189 (MQ=33)                                                                                                                                     gcgGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCTGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGa                                                                                                                                                                                              <  1:543431/151‑1 (MQ=14)                                                                                                                                                   gACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTg                                                                                                                                      <  2:786511/193‑1 (MQ=35)                                                                                                                                                      gCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGt                                                                                                <  2:963552/228‑1 (MQ=33)                                                                                                                                                                       gaggCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACaaaaaggg                                                                                                                      <  1:980653/189‑5 (MQ=18)                                                                                                                                                                                 gcAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGAGGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGt                                                                             >  1:425340/1‑220 (MQ=11)                                                                                                                                                                                   aGGGGTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGc                                                                                                                                                          <  1:1027492/141‑1 (MQ=17)                                                                                                                                                                                      cggggtcccctcgctccgggcttgctcccgggaggaccgcgctgcaggccccatccTGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGGCCGGAGTGAGGGGAcc                                                                                                                                                                                            >  2:480489‑M1/57‑106 (MQ=255)                                                                                                                                                                                             gagggagaTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGC‑GTGCTCCCGGGAGCAAGGCCGGAGCGAGGGGACCCCGGAGCGCAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGAATGAATGTCTACTTGATGCGAAAg                                                   >  1:435201/1‑235 (MQ=11)                                                                                                                                                                                                  aggTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGGAAGGGGaa                                                                                             >  2:274118/1‑187 (MQ=18)                                                                                                                                                                                                   ggTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGGCCAAAGTAACCCGCCGGACGGGCGGAAAGGTGa                                                                                              >  2:149830/1‑185 (MQ=18)                                                                                                                                                                                                    gTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGTAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATa                                                                                           >  2:716986/1‑187 (MQ=18)                                                                                                                                                                                                      cgggcttgctcccgggaggaccgcgctgcaggccccatccTGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGCCCCCGGag                                                                                                                                                                                      >  1:99398‑M1/41‑96 (MQ=255)                                                                                                                                                                                                             aTGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGAATGAATGTCTACTTGATGCGAAAGCGCACAAcccaaaagcc                                  >  1:1075365/1‑235 (MQ=37)                                                                                                                                                                                                              tGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTaa                                                                                                                      >  1:848849/1‑150 (MQ=34)                                                                                                                                                                                                               ggATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTCGGGGCCGGATGATGGGCGCCGAc                                                                                                                                                      >  2:160761/1‑117 (MQ=12)                                                                                                                                                                                                               ggATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGGGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGttt                                                                                                                                                 >  2:268954/1‑122 (MQ=17)                                                                                                                                                                                                                 aTGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATgg                                                                                                                                                              >  2:134659/1‑107 (MQ=32)                                                                                                                                                                                                                 aTGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGAATGAATGTCTACTTGATGCGAAAGCGCACAAcccaaaagcccaa                               >  2:1032153/1‑234 (MQ=38)                                                                                                                                                                                                                        tCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGAATGAATGTCTACTTGATGCGAAAGCGCACAAcccaaaagcccaaaagcccaaa                      >  1:944798/1‑236 (MQ=40)                                                                                                                                                                                                                               ctgaaggccgcatccTGGGGCCTGCAGCGCGGTCCTCCCGGGa                                                                                                                                                                                                                  >  2:1041397‑M1/16‑43 (MQ=255)                                                                                                                                                                                                                                  caggccccatccTGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGa                                                                                                                                                                                       <  1:308207‑M1/55‑1 (MQ=255)                                                                                                                                                                                                                                          atccTGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGc                                                                                                                                                          <  2:406872‑M1/84‑1 (MQ=255)                                                                                                                                                                                                                                            gATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGAATGAATGTCTACTTGATGCGAAAGCGCACAAcccaaaagcccaaaagcccaaaagcccaaaagcccaaaag    <  1:1032156/236‑1 (MQ=255)                                                                                                                                                                                                                                             aTGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGTATAGGCGCCTACATCGtg                                                                            <  2:594500/163‑1 (MQ=38)                                                                                                                                                                                                                                             aTGGGGCCTGCAGCGC‑GTGCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGAATGAATGTCTACTTGATGCGAAAGCGCACAACCcaaaagcccaaaagcccaaaagcccaaaagcccaaaagcc  >  1:770684/1‑236 (MQ=255)                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                            ATGCATTCGGCGAGGTTCTGCCCGGTCATCTGGATAAGGATATCGCCGGCATGGCTGCCCTCGGCCTGGTGTACCTGGAAGAACGCCGTTGCTCTTGCTCTTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCGGTCCTCCCGGGAGCAAGCCCGGAGTGAGGGGACCCCGGAGCGTAGCGTAGGGGCCGGATGATGGGAGCCGACGGTTTTGGTTACTTTGGCCACGACCAAAGTAACCCGCCGGAAGGGCGGAAAGGTGAATAGGCGCCTACATCGTGAATGAATGTCTACTTGATGCGAAAGCGCACAACCCAAAAGCCCAAAAGCCCAAAAGCCCAAAAGCCCAAAAGCC  >  AE015451/2087495‑2087965

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.