New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4022445	32 (0.560)	7 (0.130)	7/322	NT	20.9%	intergenic (‑140/+528)	PP_3547/emrB	putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit
	?	AE015451	4022664 =	23 (0.420)					intergenic (‑359/+309)	PP_3547/emrB	putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit

CTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCG  >  AE015451/4022222‑4022649                                                                                                                                                                                                                                |                                                                                                                                                                                                             ctggcttttgatctTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACaa                                                                                                                                                                                                   <  1:614884/235‑1 (MQ=34)                         cttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGGGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCaaacgcgacaaaacgtacacaaaaaactgtctctt                                                                                                                                                                           >  1:665336‑M1/1‑200 (MQ=255)                                     gACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGc                                                                                                                                                              >  1:130857/1‑236 (MQ=33)                                                                 cGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTg                                                                                                                                                                                             <  2:173026/177‑1 (MQ=31)                                                                        aGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGAc                                                                                                                                                                                           >  2:538647/1‑172 (MQ=31)                                                                                 gCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCaaacgcgacaaa                                                                                                                                                                                                  <  2:665333‑M1/156‑13 (MQ=255)                                                                                     ggATGCCCGTCAAGCGCTGGGGCGCCAGGAGGGGGCCTGCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTg                                                                                                                                                                                             <  2:99914/157‑1 (MQ=9)                                                                                       aTGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTCTTTTGGTTACTTTTTGTCGCGTTTGGCAAAAAGTGa                                                                                                                                                                                            >  1:299005/1‑156 (MQ=14)                                                                                                             cgaGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCAtcttgcttcttgcttcttgct                                                                                       <  1:905017/233‑1 (MQ=255)                                                                                                                         cTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGcttcttgcttcttgcttcttgcttcttg                                                                           >  1:331588/1‑235 (MQ=255)                                                                                                                          ttCGGGGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGAc                                                                                                                     <  1:944337/192‑1 (MQ=38)                                                                                                                             ggCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGAtgt                                                                      >  2:549947/1‑236 (MQ=255)                                                                                                                              gcgcGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCaa                                                                                                                                                 >  2:654103/1‑160 (MQ=37)                                                                                                                              gcgcGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCaa                                                                                                                                                 <  1:654106/160‑1 (MQ=37)                                                                                                                                      cTGGCGGGAGCAAGGCCGGAGGGAGGGAACCCCGGGGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCAtcttgcttcttgcttcttgct                                                                                       <  2:130855/210‑1 (MQ=255)                                                                                                                                                 aaGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGGCAAAACAGACGAGTTCGCAt                                                                                                           >  2:258069/1‑179 (MQ=255)                                                                                                                                                      cGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTattc                                             <  1:549950/236‑1 (MQ=255)                                                                                                                                                                gAACCCCGGAGTGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACt                                                                                                                                                                                          >  2:350138/1‑85 (MQ=17)                                                                                                                                                                gAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGGTACTTTTTGTCGCGTTTGACAAAAAGTGACCCg                                                                                                                                                                                        >  2:299002/1‑87 (MQ=12)                                                                                                                                                                      cGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCaaacgcgacaaaaagtaaccaaaaaacgctggctcctatcatccggcccctgcgctacgct                                                                                                                                                 >  2:201421‑M1/1‑59 (MQ=255)                                                                                                                                                                      cGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTc                                                                                                                              <  2:325850/139‑1 (MQ=40)                                                                                                                                                                      cGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTA‑TCATTCACg                                      <  1:153059/226‑1 (MQ=255)                                                                                                                                                                                cgcagGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCaaacgcgacaaaaagtaacc                                                                                                                                                                                          >  1:543850‑M1/1‑49 (MQ=255)                                                                                                                                                                                cgcagGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCaaacgcgacaaaaagtaacc                                                                                                                                                                                          <  2:543847‑M1/69‑21 (MQ=255)                                                                                                                                                                                  cagGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCAtcttgcttcttgcttcttgcttcttgc                                                                                 <  2:720352/172‑1 (MQ=255)                                                                                                                                                                                   agGGGCCGGCTGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGGGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAGGTGGCGCATAGTCAccc                  <  2:121517/234‑1 (MQ=255)                                                                                                                                                                                   agGGGCCGGATGATGGGAGCGCAGCGTTTGTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAGGt                                 <  2:1013337/219‑1 (MQ=255)                                                                                                                                                                                     gggCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTGTTTGTCGCGTTTGACAAAAAGTGCCGCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAg                                                                                                                                <  2:760707/122‑1 (MQ=255)                                                                                                                                                                                        ccGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTat                                               <  2:793993/200‑1 (MQ=255)                                                                                                                                                                                           gatgatGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTca                                                             <  2:629074/183‑1 (MQ=255)                                                                                                                                                                                             tgatgGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGAtg                                                                       >  2:670990/1‑171 (MQ=255)                                                                                                                                                                                             tgataGGAGC‑CAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTc                                                                                                               >  1:1058150/1‑130 (MQ=255)                                                                                                                                                                                                tgGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTAACCGTAAGGGCGAAAAGGTGAGTAAGCGTCGCCATCGCa                                                                                                                                                  >  2:861527/1‑93 (MQ=255)                                                                                                                                                                                                  ggAGCGCAGCGTTTTTTGGTTACTTTTTGTCaaacgcgacaaaaagtaaccaaaaaacgctggctcctatcatccggcccctgcgctacgctccggggttccctcgctccgggcttgctcccgggaggaccgcgctgcaggccccatcctggggcccagcgctggacgggcatccatgcccgtcacctccct                                             >  1:68039‑M1/1‑31 (MQ=255)                                                                                                                                                                                                  ggAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTAcggcg  <  2:331585/235‑1 (MQ=255)                                                                                                                                                                                                         aGCGTTTTTTGGTTACTTTTTGTCGCGTGTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTa       <  1:1014793/223‑1 (MQ=255)                                                                                                                                                                                                           cGTTTTTTGGTTACTTTTTGTCaaacgcgacaaaaagtaaccaaaaaacgctggctcctatcatccggcccctgcgctacgctccggggttccctcgctccgggcttgctcccgggaggaccgcgcttcagtccccatgctgcggc                                                                                  >  1:14281‑M1/1‑22 (MQ=255)                                                                                                                                                                                                             tttttgGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCg                                                        <  1:500351/170‑1 (MQ=255)                                                                                                                                                                                                                         tttttGTCaaacgcgacaaaaagtaaccaaaaaacgctggct                                                                                                                                                                            <  2:166489‑M1/42‑35 (MQ=255)                                                                                                                                                                                                                           tttGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAGGTGgcgc                            >  1:609025/1‑184 (MQ=255)                                                                                                                                                                                                                             tGTCGCGGTTGACAAAAAGTGACTCGACGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAGGTgg                               <  1:237363/179‑1 (MQ=255)                                                                                                                                                                                                                                caaacgcgacaaaaagtaaccaaaaaacgctggctcctatcatccggcccctgcgctacgctccggggttccctcgctccgggcttgctcccgggaggaccgcgctgcaggccccatcctggggcccagcgcttgacgggcatccatg                                                           >  2:334201‑M1/1‑1 (MQ=255)                                                                                                                                                                                                                                |                                                                                                                                                                                                             CTGGCTTTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCGGAGTGAGGGAACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTACTTTTTGTCGCGTTTGACAAAAAGTGACTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCG  >  AE015451/4022222‑4022649

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.