New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4022445	32 (0.560)	7 (0.130)	7/322	NT	20.9%	intergenic (‑140/+528)	PP_3547/emrB	putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit
	?	AE015451	4022664 =	23 (0.420)					intergenic (‑359/+309)	PP_3547/emrB	putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/multidrug efflux transport system ‑ permease subunit

CTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGC  >  AE015451/4022464‑4022881                                                                                                                                                                                                         |                                                                                                                                                                                                                           cttgatcttcgcgacttcaggaggccgaacgcaggccttgcggaggcaggtgacgggcatggatgcccgtcaagggctgaggccccaggatggggccttcggcgcggtcctgccgggagcaaggccggagtgagggaaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcAAACGCGACAAAACGTACacaaaaaactgtctctt                                                                                                                                                                                          >  1:665336‑M2/201‑227 (MQ=255)       gTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACaaa                                                                                                                                                                                                                 >  2:837727/1‑206 (MQ=255)                   aGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTT‑GCTCCTATCATCCGGACCCtt                                                                                                                                                                        >  2:768786/1‑233 (MQ=255)                                                         gcatggatgcccgtcaagcgctgaggccccaggatggggccttcggcgcggtcctgccgggagcaaggccggagtgagggaaccccggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcAAACGCGACaaa                                                                                                                                                                                                                 <  2:665333‑M2/12‑1 (MQ=255)                                                                aaaCAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGggagggc                                                                                                                         >  1:457579/1‑234 (MQ=255)                                                                        gAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCgcgc                                                                                                                    >  2:647307/1‑233 (MQ=255)                                                                         aGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAACAACGCTg‑g                                                                                                                                                                                            >  1:90389/1‑160 (MQ=255)                                                                                       ttcttgcttcttgcttcttgcttcttgGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTTaa                                                                                                                                                                                                                           >  1:331917/1‑116 (MQ=255)                                                                                                     ttcttgcttcttgGATGTGGGCATTCCCATCGAGTAGGTATTCATTCACGCCGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCgg                                                                                                                                                                              <  1:113094/146‑1 (MQ=255)                                                                                                             tcttgGATGTGGGCATCCACATTGAGTAGGTATTCATTCACGCAGGTGGCGCATAGTCACCCGTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTatc                                                                                                                                                                                    <  1:787458/132‑1 (MQ=255)                                                                                                                        ggCATTCACATCGAGTAGGTATTCATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCGTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCa                                                                           >  1:599310/1‑226 (MQ=255)                                                                                                                          cATTCACATCGAGTAGGTATTCATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCAcc                                                                >  2:470562/1‑235 (MQ=255)                                                                                                                           aTTCACATCGAGTAGGTATTCATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCAt                                                                                                        >  1:803706/1‑194 (MQ=255)                                                                                                                                     aGTAGGTATTCATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAg                                                    >  1:706750/1‑236 (MQ=255)                                                                                                                                          gTATTCATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCCCCTTTTGTCACAAGCGACAAAAAGTacc                                                                                                                                                                                                          >  2:124954/1‑80 (MQ=14)                                                                                                                                             ttcattcaCGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTgcg                                                                                                                                                                      <  2:797681/115‑1 (MQ=255)                                                                                                                                              tcattcaCGCAGCTGGCGCATAGTCACCCTTCCGCCCTTTCGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCTgcg                                                                                                                                                                      <  2:323603/113‑1 (MQ=255)                                                                                                                                              cggagcgcagcgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCTGCGCTACGCt                                                                                                                                                               >  2:201421‑M2/60‑120 (MQ=255)                                                                                                                                                  tcaCGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTg                                                                                                                  >  1:571832/1‑161 (MQ=255)                                                                                                                                                        cgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcAAACGCGACAAAAAGTAAcc                                                                                                                                                                                                         >  1:543850‑M2/50‑69 (MQ=255)                                                                                                                                                        cgcaggggccggatgatgggagcgcagcgttttttggttactttttgtcAAACGCGACAAAAAGTAAcc                                                                                                                                                                                                         <  2:543847‑M2/20‑1 (MQ=255)                                                                                                                                                        aGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCACGccc                                                 >  2:905932/1‑220 (MQ=255)                                                                                                                                                        aGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGGAACCAAAAAACg                                                                                                                                                                                                 >  2:225013/1‑77 (MQ=255)                                                                                                                                                        aGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGGCaa                                                                                                                                                                                                                           >  2:117598/1‑51 (MQ=255)                                                                                                                                                                    gTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATcc                     <  1:470565/236‑1 (MQ=255)                                                                                                                                                                     gaaagggatggCCCTTACGGCGAGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTACGCTCCGGGGTCCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTCCGCAAGccc                                                 <  1:48878/198‑1 (MQ=11)                                                                                                                                                                          ggagcgcagcgttttttggttactttttgtcAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTGGACGGGCATCCATGCCCGTCACCTCCCt                                                           >  1:68039‑M2/32‑192 (MQ=255)                                                                                                                                                                                 ccTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGt                             >  2:522919/1‑215 (MQ=255)                                                                                                                                                                                  cTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCTGCGCTCCGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCAGGAGGACcgcg                                                                                                                     >  2:791972/1‑126 (MQ=255)                                                                                                                                                                                   cgttttttggttactttttgtcAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTTCAGTCCCCATGCTGCGGc                                                                                                >  1:14281‑M2/23‑146 (MQ=255)                                                                                                                                                                                      cggcggGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCt                                                                                                     >  2:597653/1‑138 (MQ=255)                                                                                                                                                                                        gcggGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATcgc  >  1:823260/1‑235 (MQ=255)                                                                                                                                                                                           ggTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCCCCGGGCTTGCTCCCCGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCCGCGCTTGACGGGCATCCCTGcc                                                                       >  1:139214/1‑163 (MQ=255)                                                                                                                                                                                                 tttttgtcAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCt                                                                                                                                                                                          <  2:166489‑M2/34‑1 (MQ=255)                                                                                                                                                                                                        cAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATg                                                                         >  2:334201‑M2/2‑148 (MQ=255)                                                                                                                                                                                                         |                                                                                                                                                                                                                           CTCGCCGTAAGGGCGAAAAGGTGAGTCAGCGTCGCCATCGCAAACGGACGGTTCGCTGAGTCAAAACAGACGAGTTCGCATCTTGCTTCTTGCTTCTTGCTTCTTGCTTCTTGGATGTGGGCATTCACATCGAGTAGGTATTCATTCACGCAGGTGGCGCATAGTCACCCTTCCGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGTAACCAAAAAACGCTG‑GCTCCTATCATCCGGCCCCTGCGCTACGCTCCGGGGTTCCCTCGCTCCGGGCTTGCTCCCGGGAGGACCGCGCTGCAGGCCCCATCCTGGGGCCCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCCGCGGCGCCTGGGCTATCGC  >  AE015451/4022464‑4022881

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.