New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2283311	39 (0.680)	3 (0.050)	3/324	NT	8.1%	coding (504/978 nt)	PP_2011	conserved exported protein of unknown function
	?	AE015451	= 2283449	31 (0.570)					coding (366/978 nt)	PP_2011	conserved exported protein of unknown function

CGCCAGCGCCTGACGGCTGTGCGCTCCCGTGGACATGGGCAACTGGTGCCCCGCCAGGTGCGCAAGCTTGGTCCCCAGCCGGTCATGGCAACCTGGCCCCAGCCAGGCATGGGGATCGTGCCCGGCGTCTTCCGGGCCCAGGTACAGCTTGATCGCCAGTTCCAGGTGGTGCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGG  >  AE015451/2283215‑2283646                                                                                                                                                                                                                                           |                                                                                                                                                                                                      cgcCAGCGCCTGACGGCTGTGCGCTCCCGTGGACATGGGCAACTGGTGCCCCGCCAGGTGCGCAAGCTTGGTCCCCAGCCGGTCATGGCAACCTGGCCCCAGCCAGGCATGGGGATCGTGCCCGGCGTCTTCCGGGCCCAGGTACAGCTTGATCGCCAGTTCCAGGTGGTGCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCg                                                                                                                                                                                                      >  1:34480‑M2/1‑235 (MQ=255)               ggCTGTGCGCTCCCGTGGACATGGGCAACTGGTGCCCCGCCAGGTGCGCAAGCTTGGTCCCCAGCCGGTCATGGCAACCTGGCCCCAGCCAGGCATGGGGATCGTGCCCGGCGTCTTCCGGGCCCAGGTACAGCTTGATCGCCAGTTCCAGGTGGTGCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTggcg                                                                                                                                                                                           >  2:921167/1‑233 (MQ=255)                                      ggCAACTGGTGCCCCGCCAGGTGCGCAAGCTTGGTCCCCAGCCGGTCATGGCAACCTGGCCCCAGCCAGGCATGGGGATCGTGCCCGGCGTCTTCCGGGCCCAGGTACAGCTTGATCGCCAGTTCCAGGTGGTGCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATgcctggcgcc                                                                                                                                                                   >  2:904229/1‑234 (MQ=255)                                              gTGCCCCGCCAGGTGCGCAAGCTTGGTCCCCAGCCGGTCATGGCAACCTGGCCCCAGCCAGGCATGGGGATCGTGCCCGGCGTCTTCCGGGCCCAGGTACAGCTTGATCGCCAGTTCCAGGTGGTGCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAggg                                                                                                                                                         <  2:747382/236‑1 (MQ=255)                                                 ccccGCCAGGTGCGCAAGCTTGGTCCCCAGCCGGTCATGGCAACCTGGCCCCAGCCAGGCATGGGGATCGTGCCCGGCGTCTTCCGGGCCCAGGTACAGCTTGATCGCCAGTTCCAGGTGGTGCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTggcggc                                                                                                                                                                                         <  1:144550/201‑1 (MQ=255)                                                      ccAGGTGCGCAAGCTTGGTCCCCAGCCGGTCATGGCAACCTGGCCCCAGCCAGGCATGGGGATCGTGCCCGGCGTCTTCCGGGCCCAGGTACAGCTTGATCGCCAGTTCCAGGTGGTGCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTg                                                                                                                                                  <  1:586503/235‑1 (MQ=255)                                                       cAGGTGCGCAAGCTTGGTCCCCAGCCGGTCATGGCAACCTGGCCCCAGCCAGGCATGGGGATCGTGCCCGGCGTCTTCCGGGCCCAGGTACAGCTTGATCGCCAGTTCCAGGTGGTGCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGcc                                                                                                                                                <  1:904232/236‑1 (MQ=255)                                                          gTGCGCAAGCTTGGTCCCCAGCCGGTCATGGCAACCTGGCCCCAGCCAGGCATGGGGATCGTGCCCGGCGTCTTCCGGGCCCAGGTACAGCTTGATCGCCAGTTCCAGGTGGTGCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCcac                                                                                                                                              <  1:422208/235‑1 (MQ=255)                                                                     tGGTCCCCAGCCGGTCATGGCAACCTGGCCCCAGCCAGGCATGGGGATCGTGCCCGGCGTCTTCCGGGCCCAGGTACAGCTTGATCGCCAGTTCCAGGTGGTGCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCgta                                                                                                                                   <  1:619918/235‑1 (MQ=255)                                                                                cGGTCATGGCCACCTGGCCCCAGCCAGGCATGGGGATCGTGCCCGGCGTCTTCCGGGCCCAGGTACAGCTTGATCGCCAGTTCCAGGTGGTGCCCGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCa                                                                                                                        <  1:252630/235‑1 (MQ=255)                                                                                    cATGGCAACCTGGCCCCAGCCAGGCATGGGGATCGTGCCCGGCGTCTTCCGGGCCCAGGTACAGCTTGATCGCCAGTTCCAGGTGGTGCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGc                                                                                                                                          <  2:824620/213‑1 (MQ=255)                                                                                                 ccccAGCCAGGCATGGGGATCGTGCCCGGCGTCTTCCGGGCCCAGGTACAGCTTGATCGCCAGTTCCAGGTGGTGCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAAtt                                                                                                      <  1:1039257/236‑1 (MQ=255)                                                                                                                 ggATCGTGCCCGGCGTCTTCCGGGCCCAGGTACAGCTTGATCGCCAGTTCCAGGTGGTGCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCgccagcc                                                                                             <  1:859628/229‑1 (MQ=255)                                                                                                                   aTCGTGCCCGGCGTCTTCCGGGCCCCGGTACAGCTTGATCGCCAGTTCCAGGTGGTGCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGcc                                                                                                           <  1:396938/213‑1 (MQ=255)                                                                                                                     cGTGCCCGGCGTCTTCCGGGCCCAGGTACAGC‑TGATCGCCAGTTCCAGGTGGTGCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAAc                                                                                  <  1:613687/235‑1 (MQ=255)                                                                                                                         cccGGCGTCTTCCGGGCCCAGGTACAGCTTGATCGCCAGTTCCAGGTGGTGCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAAcggtc                                                                              >  1:794749/1‑236 (MQ=255)                                                                                                                                     cGGGCCCGGGTACAGCTTGATCGCCAGTTCCAGGTGGTGCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATgcctggcgc                                                                                                                                                                    <  2:298335/138‑1 (MQ=255)                                                                                                                                      gggCCCAGGTACAGCTTGATCGCCAGTTCCAGGTGGTGCACGCCGGCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCgcc                                                                                                 <  1:1084425/204‑1 (MQ=255)                                                                                                                                           cAGGTACAGCTTGATCGCCAGTTCCAGGTGGTGCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCcaca                                                                                                                                             <  1:50016/155‑1 (MQ=255)                                                                                                                                               tACAGCTTGATCGCCAGTTCCAGGTGGTGCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCgg                                                                                                                >  1:591570/1‑180 (MQ=255)                                                                                                                                               tACAGCTTGATCGCCAGTTCCAGGTGGTGCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCgg                                                                                                                <  2:591567/180‑1 (MQ=255)                                                                                                                                                         tCGCCAGTTCCAGGTGGTGCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCgg                                                                                                                <  2:492070/170‑1 (MQ=255)                                                                                                                                                           gCCAGGTCCAGGTGGTGCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCca                                                                                                                                               <  2:267661/137‑1 (MQ=255)                                                                                                                                                                  ccAGGTGGTGCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAgg                                        <  2:913783/233‑1 (MQ=255)                                                                                                                                                                        ggtgCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCgccaggttgccatgaccggctggggaccaagcttgcgcacctggcggggcaccagttgcccatgtccacgggagcgcacagccgtcaggcgctggcgcagctaggggtggagcaggtgcaggcgcaaatgtggctgggtggttacctgttctatccacggcctgggca                               <  1:560733‑M2/236‑169 (MQ=255)                                                                                                                                                                             aCGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCagcagc                                                                                                                                                                                  >  2:756534/1‑84 (MQ=255)                                                                                                                                                                             aCGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCagcagc                                                                                                                                                                                  <  1:756537/84‑1 (MQ=255)                                                                                                                                                                               gCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCgccaggttgccatgaccggctggggaccaagcttgcgcacctggcggggcaccagttg                                                                                                                                             >  1:611433‑M2/1‑61 (MQ=255)                                                                                                                                                                               gCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCgccaggttgccatgaccggctggggaccaagcttgcgcacctggcggggcaccagttg                                                                                                                                             <  2:611430‑M2/119‑59 (MQ=255)                                                                                                                                                                                ccGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGgctg                             <  1:76570/230‑1 (MQ=255)                                                                                                                                                                                  gtcgcggtcgcgCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGccc                     <  1:679743/236‑1 (MQ=255)                                                                                                                                                                                  gtcgcggccgcgCAGCACCACGTCTAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCAAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTc                                            <  1:625276/213‑1 (MQ=255)                                                                                                                                                                                     gcggtcgcgCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCg                                      <  1:922620/216‑1 (MQ=255)                                                                                                                                                                                                     acGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCgg  <  1:651228/236‑1 (MQ=255)                                                                                                                                                                                                                     gggTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCGCGATgcctggcgcctgggg                                                                                                                                                              >  1:540797/1‑62 (MQ=255)                                                                                                                                                                                                                               gccgTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGcc                                                                                                                                                <  2:231039/68‑1 (MQ=255)                                                                                                                                                                                                                                      cgAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGcc                                                          <  1:768322/147‑1 (MQ=255)                                                                                                                                                                                                                                       gAACCGCCAGGTGGGCGGCCAGCAGCTCGATGCCGGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCAt                                                                        <  2:1014218/132‑1 (MQ=255)                                                                                                                                                                                                                                          tCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTgcgc                       <  2:678341/178‑1 (MQ=255)                                                                                                                                                                                                                                           |                                                                                                                                                                                                      CGCCAGCGCCTGACGGCTGTGCGCTCCCGTGGACATGGGCAACTGGTGCCCCGCCAGGTGCGCAAGCTTGGTCCCCAGCCGGTCATGGCAACCTGGCCCCAGCCAGGCATGGGGATCGTGCCCGGCGTCTTCCGGGCCCAGGTACAGCTTGATCGCCAGTTCCAGGTGGTGCACGCCGTCGCGGTCGCGCAGCACCACGTCGAGCTCGCCCAGGGTGTGCCCGCCGTCGCGAATCGCCAGGTTGGCGGCCAGCAGCTCGATGCCTGGCGCCTGGCTCAGGGCAAATTGCCACAGGCGTTCGTAGTAATGCCCCAGGCGCCGGCTGCCCAATTGCGCCAGCCAGGCGCGCAACGGTCGGTCATCGGCATCCAGGGCCCGCAACCATTGTTCAAGGCGTTGCGGCTGCTGCGCCCACAGGCTGCCCGCCAGCGG  >  AE015451/2283215‑2283646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.