New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3933799 =	55 (0.950)	3 (0.050)	3/326	NT	5.8%	coding (1614/1911 nt)	PP_3467	Sigma‑54 dependent transcriptional regulator
	?	AE015451	3933920 =	45 (0.820)					coding (1493/1911 nt)	PP_3467	Sigma‑54 dependent transcriptional regulator

CAAGGGTCAGCACCTGCTCGCCATCCTCGCGCATGGCCAGCGCGGTGCGTACCACCATTTCCAGCTGACGGATGTTGCCGGGCCAGTCGAAGCCTTCGAGCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGATGTCCTGCTCGTCACCCGCCCCCAAGGGTGCTACGCGGCGCTCCTGCAGTACCCGCAACAGGCGTGCTTGCAGGGCGAGCGGCATGTCGCCGATTTCGTCGAGGAACAGCGTGCCACCATGGGCCTGCATCAGCCGCCCGACCATGC  >  AE015451/3933693‑3934151                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                        cAAGGGTCAGCACCTGCTCGCCATCCTCGCGCATGGCCAGCGCGGTGCGTACCACCATTTCCAGCTGACGGATGTTGCCGGGCCAGTCGAAGCCTTCGAGCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCgg                                                                                                                                                                                                                                       >  1:291802/1‑230 (MQ=255)   aGGGTCAGCACCTGCTCGCCATCCTCGCGCATGGCCAGCGCGGTGCGTACCACCATTTCCAGCTGACGGATGTTGCCGGGCCAGTCGAAGCCTTCGAGCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAg                                                                                                                                                                                                                               >  1:435143/1‑236 (MQ=255)            aCCTGCTCGCCATCCCCGCGCATGGCCAGCGCGGTGCGTACCACCATTTCCAGCTGACGGATGTTGCCGGGCCAGTCGAAGCCTTCGAGCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCt                                                                                                                                                                                                                           <  1:196609/231‑1 (MQ=255)                   cGCCATCCTCGCGCATGGCCAGCGCGGTGCGTACCACCATTTCCAGCTGACGGATGTTGCCGGGCCAGTCGAAGCCTTCGAGCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAg                                                                                                                                                                                                                  <  2:435140/233‑1 (MQ=255)                       aTCCTCGCGCATGGCCAGCGCGGTGCGTACCACCATTTCCAGCTGACGGATGTTGCCGGGCCAGTCGAAGCCTTCGAGCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTa                                                                                                                                                                                                                                     <  1:136865/210‑1 (MQ=255)                               gcATGGCCAGCGCGGTGCGTACCACCATTTCCAGCTGACGGATGTTGCCGGGCCAGTCGAAGCCTTCGAGCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACCGGTCTTCACGGAAGt                                                                                                                                                                                                                 >  2:370980/1‑222 (MQ=255)                                      cAGCGCGGTGCGTACCACCATTTCCAGCTGACGGATGTTGCCGGGCCAGTCGAAGCCTTCGAGCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCa                                                                                                                                                                                                  >  1:389793/1‑230 (MQ=255)                                                cGTACCACCATTTCCAGCTGACGGATGTTGCCGGGCCAGTCGAAGCCTTCGAGCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTcgc                                                                                                                                                                                   <  1:635471/235‑1 (MQ=255)                                                  tACCACCATTTCCAGCTGACGGATGTTGCCGGGCCAGTCGAAGCCTTCGAGCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCt                                                                                                                                                                                            >  2:757229/1‑224 (MQ=255)                                                           ttCCAGCTGACGGATGTTGCCGGGCCAGTCGAAGCCTTCGAGCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTa                                                                                                                                                                                                                                     <  1:96040/174‑1 (MQ=255)                                                              cggCTGACGGATGTTGCCGGGCCAGTCGAAGCCTTCGAGCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGaa                                                                                                                                                                                                                   <  2:893364/187‑1 (MQ=255)                                                                      ggATGTTGCCGGGCCAGTCGAAGCCTTCGAGCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAg                                                                                                                                                                                                                  <  1:451843/182‑1 (MQ=255)                                                                       gATGTTGCCGGGCCAGTCGAAGCCTTCGAGCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTcc                                                                                                                                                                                                         >  2:698312/1‑190 (MQ=255)                                                                                     aGTCGAAGCCTTCGAGCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGtgc                                                                                                                                                                                                               >  2:635141/1‑170 (MQ=255)                                                                                            gCCTTCGAGCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCggt                                                                                                                                                                                <  2:522796/194‑1 (MQ=255)                                                                                            gCCTTCGAGCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGATGTCCTGCTCGTCa                                                                                                                                       <  1:1040449/235‑1 (MQ=255)                                                                                                    gCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGATGTCCTGCTCGTCACCCGcccc                                                                                                                               >  1:1025785/1‑235 (MQ=255)                                                                                                           GGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGATGTCCTGCTCGTCACCCGCCCCCAAGGGTg                                                                                                                       <  1:903427‑M1/236‑1 (MQ=255)                                                                                                              CAACGCCGGGTCGGGGGTTACGCCACGCGCATCGGCCTGGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGgc                                                                                                                                                                                               >  2:93641‑M1/1‑161 (MQ=255)                                                                                                                     gggTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGATGTCCTGCTCGTCACCCGCCCCCACGGGTGc                                                                                                                      >  1:608094/1‑227 (MQ=255)                                                                                                                       gtcgctgcgcctgccggccctgcgtgatcgcgacgacctggcggcgatcatccagggcctgctggacaaggccgatgcgcgtggcgtaaccctcgacccggcgttgaccCGGTAGACCAGGTCTTCACGGAAGTGCTGCTCCTGc                                                                                                                                                                                                      <  2:579088‑M2/36‑1 (MQ=255)                                                                                                                          gAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCCGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGATGTCCTGCTc                                                                                                                                           >  1:3139/1‑201 (MQ=255)                                                                                                                          gAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGAGGCGCAGATCAGCGCCACGTCGATGTCCTGCTCGTCACCCGccac                                                                                                                               >  1:339803/1‑211 (MQ=255)                                                                                                                              gTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCggtgggt                                                                                                                                                                            >  2:411313/1‑164 (MQ=255)                                                                                                                                tgcGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGATGTCCTGCTCGTCa                                                                                                                                       <  2:133775/197‑1 (MQ=255)                                                                                                                                     cACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCggtgggg                                                                                                                                                                            >  1:292893/1‑156 (MQ=255)                                                                                                                                     cACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGgtgggtgg                                                                                                                                                                          >  2:832839/1‑159 (MQ=255)                                                                                                                                     cACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGATGTCCTGCTCGTCACCCGCCCCCAAGGGTGCTACGCGGCGCTCCTGCAGTACCCGc                                                                                             <  1:627585/236‑1 (MQ=255)                                                                                                                                       cgcgCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGATGTCCTGCTCGTCACCCGCCCCCAAGGGTGCTACGCGGCGCTCCTGCAGTACCCGCaa                                                                                           >  1:944892/1‑236 (MQ=255)                                                                                                                                        gcgcATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGATGTCCTGCTCGTCa                                                                                                                                       <  1:532379/191‑1 (MQ=255)                                                                                                                                          gcATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGAt                                                                                                                                                    <  2:488025/176‑1 (MQ=255)                                                                                                                                          gcATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGATGTCCTGCTCGTCACCCGCCCCCAAGGGTGCTACGCGGCGCTCCTGCAGTACCCGCAACAg                                                                                        >  1:395801/1‑236 (MQ=255)                                                                                                                                           cATCGGCCTTGTCCAGCAGGCCCTGGATGATCACCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCGCGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCATATCAGCGCCACGTCGATGTCCTGCTCGTCACCCGCCCCCAAGGGTGCTACGCGGCGCTCCTGCAGTACCCGCa                                                                                            >  2:662759/1‑231 (MQ=255)                                                                                                                                            aTCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCCGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGATGTCCTGCTCGTCACCCGCCCCCAAGGGTGCTACGCGGCGCCCCTGCAGTACCCGCAACAGGc                                                                                      >  1:15190/1‑236 (MQ=255)                                                                                                                                                         agcagGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGATGTCCTGCTCGTCACCCGCCCCCAAGGGTGCTACGCGGCGCTCCTGCAGTACCCGCAACAGGCGTGCTTGCAg                                                                            >  2:921508/1‑233 (MQ=255)                                                                                                                                                           cagGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGt                                                                                                                                                                                                                 <  2:870171/98‑1 (MQ=255)                                                                                                                                                               cccTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGATGTCCTGCTCGTCACCCGCCCCCAAGGGTGCTACGCGGCGCTCCTGCAGTACCCGCAACAg                                                                                        <  1:889716/215‑1 (MQ=255)                                                                                                                                                                 cTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCggtgggtg                                                                                                                                                                           <  2:209638/130‑1 (MQ=255)                                                                                                                                                                   ggATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGATGTCCTGCTCGTCACCCGCCCCCAAGGGTGCTACGCGGCGCTCCTGCAGTACCCGCAACAGGCGTGCTTGCAGGGCGAGCGGCAt                                                                >  1:259663/1‑235 (MQ=255)                                                                                                                                                                   ggATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGCGGCGCAGATCa                                                                                                                                                                 >  2:31848/1‑138 (MQ=255)                                                                                                                                                                       gatCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGATGGCCTGCGCGt                                                                                                                                         >  2:154793/1‑158 (MQ=255)                                                                                                                                                                        atCGCCGCCAGGTCGTCGCGTTCACGCAGCGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCggt                                                                                                                                                                                <  2:814474/118‑1 (MQ=255)                                                                                                                                                                           gccgccAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGGAGAACAGGTCTTCACGGCAGTGCTGCTCCTGCACCAGgcg                                                                                                                                                                                              >  2:196530/1‑101 (MQ=255)                                                                                                                                                                            ccgccAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGATGTCCTGCTCGTCACCCGCCCCCAAGGGTGCTACGCGGCGCTCCTGCAGTACCCGCAACa                                                                                         >  2:889713/1‑201 (MQ=255)                                                                                                                                                                            ccgccAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGATGTCCTGCTCGTCACCCGCCCCCAAGGGTGCTACGCGGCGCTCCTGCAGTACCCGCAACAGGCGTGCTTGCAGGGCGAGCGGCATGTCGCCGAtt                                                      >  1:1003716/1‑236 (MQ=255)                                                                                                                                                                             cgccAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAg                                                                                                                                                                                                                  <  1:127674/79‑1 (MQ=255)                                                                                                                                                                             cgccAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAg                                                                                                                                                                                                                  >  2:127672/1‑79 (MQ=255)                                                                                                                                                                                 aGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGATGTCCTGCTCGTCACCCGCCCCCAAGGGTGCTACGCGGCGCTCCTGCAGTACCCGCAACAg                                                                                        >  2:868149/1‑197 (MQ=255)                                                                                                                                                                                      ggacaaggccgatgcgcgtggcgtaaccctcgacccggcgttgaccCGGTAGAACAGGTCTTCACGGAAGtg                                                                                                                                                                                                                <  1:230349‑M2/26‑1 (MQ=255)                                                                                                                                                                                      ggacaaggccgatgcgcgtggcgtaaccctcgacccggcgttgaccCGGTAGAACAGGTCTTCACGGAAGtg                                                                                                                                                                                                                >  2:230346‑M2/47‑72 (MQ=255)                                                                                                                                                                                               aCGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGATGTCCTGCTCGTCACCCGCCCCCAAGGGTGCTACGCGGCGCTCCTGCAGTACCCGCAACAGGCGTGCTTGCAGGGCGAGCGGCATGTCGCCGATTTCGTCGAGGAACAGCg                                      <  2:395798/233‑1 (MQ=255)                                                                                                                                                                                                                 cAGCGACACCCCGTTGACCCGGTAGAGCAGGTCTTAACGGAAGGGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGATGTCCTGCTCGTCACCCGCCCCCAAGGGTGCTAcg                                                                                                                  <  2:272756/139‑1 (MQ=255)                                                                                                                                                                                                                  aGCGACACACCGTTGACCCGGTAGAACAGGTCCTCACGGACGCGCGGCTCCTGCACCAGGCGCTCGAGGTcgc                                                                                                                                                                                   >  2:229339/1‑73 (MQ=255)                                                                                                                                                                                                                           ccGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGt                                                                                                                                                                                      >  1:783560/1‑61 (MQ=255)                                                                                                                                                                                                                                 accCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGATGTCCTGCTCGTCACCCGCCCCCAAGGGTGCTACGCGGCGCTCCTGCAGTACCCGCAACAGGCGTGCTTGCAGGGCGAGCGGCATGTCGCCGATTTCGTCGAGGAACAGCGTGCCACCATGGGCCTGCATCAgccgc            >  1:986186‑M2/4‑225 (MQ=255)                                                                                                                                                                                                                                 accCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGATGTCCTGCTCGTCACCCGCCCCCAAGGGTGCTACGCGGCGCTCCTGCAGTACCCGCAACAGGCGTGCTTGCAGGGCGAGCGGCATGTCGCCGATTTCGTCGAGGAACAGCGTGCCACCATGGGCCTGCATCAGCCGCCCGACCATgc  >  1:149597‑M2/4‑235 (MQ=255)                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                        CAAGGGTCAGCACCTGCTCGCCATCCTCGCGCATGGCCAGCGCGGTGCGTACCACCATTTCCAGCTGACGGATGTTGCCGGGCCAGTCGAAGCCTTCGAGCAACGCGGTCAACGCCGGGTCGAGGGTTACGCCACGCGCATCGGCCTTGTCCAGCAGGCCCTGGATGATCGCCGCCAGGTCGTCGCGTTCACGCAGGGCCGGCAGGCGCAGCGACACACCGTTGACCCGGTAGAACAGGTCTTCACGGAAGTGCTGCTCCTGCACCAGGCGCTTGAGGTCGCGGTGGGTGGCGCAGATCAGCGCCACGTCGATGTCCTGCTCGTCACCCGCCCCCAAGGGTGCTACGCGGCGCTCCTGCAGTACCCGCAACAGGCGTGCTTGCAGGGCGAGCGGCATGTCGCCGATTTCGTCGAGGAACAGCGTGCCACCATGGGCCTGCATCAGCCGCCCGACCATGC  >  AE015451/3933693‑3934151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.