New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4332228	33 (0.570)	4 (0.070)	3/324	NT	11.4%	coding (32/864 nt)	PP_3804	conserved exported protein of unknown function
	?	AE015451	= 4332298	31 (0.570)					coding (102/864 nt)	PP_3804	conserved exported protein of unknown function

TCGGCATCCTGCTACCGATCGTTTTCGACCTGCCGGTGCCGTCAGGGGCCGCGATCATCCTGGTCGCCGGCATCTGCTTTGCTCTGGCCGCTCTGGCCCGCGCGCTCGTTCCCCGCCTGCAAGGAAACCCGGCATGAACTTCAAACACCTGACCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCAGCCGCCAACCGTCGTATTTCAGCGGGCGTGGCGGCGCAGGCCTGCACAAGGCCGCCCAGCAGGCAGATGCGGTGATCGGGGTGCGTTCGATCTGGCGTGATGACCCGCTGTACCCGATGGCCCGACGCAGCAATATCCGCATTGTCGAGATCGATGCC  >  AE015451/4332064‑4332523                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                  tCGGCATCCTGCTACCGATCGTTTTCGACCTGCCGGTGCCGTCAGGGGCCGCGATCATCCTGGTCGCCGGCATCTGCTTTGCTCTGGCCGCTCTGGCCCGCGCGCTCGTTCCCCGCCTGCAAGGAAACCCGGCATGAACTTCAAACACCTGACCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGg                                                                                                                                                                                                                                  >  1:744606‑M2/1‑235 (MQ=255)   ggCATCCTGCTACCGATCGTTTTCGACCTGCCGGTGCCGTCAGGGGCCGCGATCATCCTGGTCGCCGGCATCTGCTTTGCTCTGGCCGCTCTGGCCCGCGCGCTCGTTCCCCGCCTGCAAGGAAACCCGGCATGAACTTCAAACACCTGACCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATCGCCTGgc                                                                                                                                                                                                                                 <  1:933512‑M2/235‑3 (MQ=255)   ggCATCCTGCTACCGATCGTTTTCGACCTGCCGGTGCCGTCAGGGGCCGCGATCATCCTGGTCGCCGGCATCTGCTTTGCTCTGGCCGCTCTGGCCCGCGCGCTCGTTCCCCGCCTGCAAGGAAACCCGGCATGAACTTCAAACACCTGACCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGgc                                                                                                                                                                                                                                 <  1:646844‑M2/235‑3 (MQ=255)   ggCATCCTGCTACCGATCGTTTTCGACCTGCCGGTGCCGTCAGGGGCCGCGATCATCCTGGTCGCCGGCATCTGCTTTGCTCTGGCCGCTCTGGCCCGCGCGCTCGTTCCCCGCCTGCAAGGAAACCCGGCATGAACTTCAAACACCTGACCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGgc                                                                                                                                                                                                                                 <  1:615692‑M2/235‑3 (MQ=255)        ccTGCTACCGATCGTTTTCGACCTGCCGGTGCCGTCAGGGGCCGCGATCATCCTGGTCGCCGGCATCTGCTTTGCTCTGGCCGCTCTGGCCCGCGCGCTCGTTCCCCGCCTGCAAGGAAACCCGGCATGAACTTCAAACACCTGACCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGgcca                                                                                                                                                                                                                               <  1:589157‑M2/232‑5 (MQ=255)                            tccTGCCGGTGCCGTCAGGGGCCGCGATCATCCTGGTCGCCGGCATCTGCTTTGCTCTGGCCGCTCTGGCCCGCGCGCTCGTTCCCCGCCTGCAAGGAAACCCGGCATGAACTTCAAACACCTGACCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACt                                                                                                                                                                                                           <  1:1013433/231‑1 (MQ=255)                                    gTGCCGTCAGGGGCCGCGATCATCCTGGTCGCCGGCATCTGCTTTGCTCTGGCCGCTCTGGCCCGCGCGCTCGTTCCCCGCCTGCAAGGAAACCCGGCATGAACTTCAAACACCTGACCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCACCGCCTTGCTCGAAGGCACTGc                                                                                                                                                                                                         >  2:952749/1‑226 (MQ=255)                                        cGTCAGGGGCCGCGATCATCCTGGTCGCCGGCATCTGCTTTGCTCTGGCCGCTCTGGCCCGCGCGCTCGTTCCCCGCCTGCAAGGAAACCCGGCATGAACTTCAAACACCTGACCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCt                                                                                                                                                                                                <  1:481512/231‑1 (MQ=255)                                                                  gCCGGCATCTGCTTTGCTCTGGCCGCTCTGGCCCGCGCGCTCGTTCCCCGCCTGCAAGGAAACCCGGCATGAACTTCAAACACCTGACCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAAcctgcctg                                                                                                                                                                   <  2:615689/234‑1 (MQ=255)                                                                         tCTGCTTTGCTCTGGCCGCTCTGGCCCGCGCGCTCGTTCCCCGCCTGCAAGGAAACCCGGCATGAACTTCAAACACCTGACCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCa                                                                                                                                                                                <  1:406284/214‑1 (MQ=255)                                                                           tGCTTTGCTCTGGCCGCTCTGGCCCGCGCGCTCGTTCCCCGCCTGCAAGGAAACCCGGCATGAACTTCAAACACCTGACCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCg                                                                                                                                                                                                        <  2:824204/188‑1 (MQ=255)                                                                                   tctggccgctctggccCGCGCGCTCGTTCCCCGCCTGCAAGGAAACCCGGCATGAACTTCAAACACCTGACCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCAGCCGCCAACCGTCGTa                                                                                                                                                >  1:642947/1‑236 (MQ=255)                                                                                                      gcgcTCGTCCCCCGCCTGCAAGGAAACCCGGCATGAACTTCAAACACCTGACCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCAGCCGCCAAcc                                                                                                                                                      <  1:296308/211‑1 (MQ=255)                                                                                                            gTTCCCCGCCTGCAAGGAAACCCGGCATGAACTTCAAACACCTGACCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGa                                                                                                                                                                                                                  <  1:158017/145‑1 (MQ=255)                                                                                                             ttCCCCGCCTGCAAGGAAACCCGGCATGAACTTCAAACACCTGACCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCAGCCGCCAACCGTCGTATTTCAGCGGGCGTGGCGGCGCAGGc                                                                                                                       >  1:736928/1‑235 (MQ=255)                                                                                                              tCCCCGCCTGCAAGGAAACCCGGCATGAACTTCAAACACCTGACCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCAGCCGCCAACCGTCGTAtt                                                                                                                                              <  1:302124/211‑1 (MQ=255)                                                                                                                cccGCCTGCAAGGAAACCCGGCATGAACTTCAAACGCCTGACCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACctgcctgc                                                                                                                                                                  <  1:338437/189‑1 (MQ=255)                                                                                                                       gCAAGGAAACCCGGCATGAACTTCAAACACCTGACCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCAgcc                                                                                                                                                             <  1:576195/187‑1 (MQ=255)                                                                                                                       gCAAGGAAACCCGGCATGAACTTCAAACACCTGACCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGACTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTACAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCAgcc                                                                                                                                                             >  2:576192/1‑187 (MQ=255)                                                                                                                            gAAACCCGGCATGAACTTCAAACACCTGACCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCt                                                                                                                                                                                                                     <  2:626879/126‑1 (MQ=255)                                                                                                                                 ccGGCATGACCTTCCAACGCCTGCCCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCAGCCGCCAACCGTCGTATTTCAGCGGGCGTGGCGGCGCa                                                                                                                          <  1:285967/212‑1 (MQ=255)                                                                                                                                                      tGACCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCAGCCGCCAACCGTCGTATTTCAGCGGGCGTGGCGGCGCAGGCCTGCACAAGGCCGCCCAgcaggcag                                                                                              >  1:1006816/1‑219 (MQ=255)                                                                                                                                                       gACCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCAGCCGCCAACCGTCGTATTTCAGCGGGCGTGGCGGCGCAGGCCTGCACAAGGCCGCCCAGCAGGCAGATGCGGTGATCgggg                                                                               >  2:575804/1‑233 (MQ=255)                                                                                                                                                                gcTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCAGCCGCCAACCGTCGTATTTCAGCGGGCGTGGCGGCGCAGGCCTGCACAAGGCCGCCCAGCAGGCAGATGCGGTGATCGGGGTGCGTTCGATc                                                                    >  1:608285/1‑235 (MQ=255)                                                                                                                                                                      aCTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCAGCCGCCAACCGTCGTATTTCAGCGGGCATGGCGGCGCAGGCCTGCACAAGGCCGCCCAGCAGGCAGATGCGGTGATCGGGGTGCGTTCGATCTGGAGt                                                              >  1:801531/1‑235 (MQ=255)                                                                                                                                                                       cTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGgccagcgccagggtcaggtgtttgaagttcatgccgggtttccttgcaggcggggaacgagcgcgcgggccagagcggccagagcaaagcagatgccggcgaccaggat                                                                                                                      <  2:370055‑M2/178‑110 (MQ=255)                                                                                                                                                                         ggccggccTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGCCCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCAGCCGCCaa                                                                                                                                                        <  2:177835/142‑1 (MQ=255)                                                                                                                                                                          gccggccTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCAGCCGCCAACCGTCGTATTTCAGCGGGCGTGGCGGCGCAGGCCTGCACAAGGCCGCCCAGCAGGCAGATGCGGTGATCGGGGTGCGTTCGATCTGGCGtgatg                                                          <  1:676820/235‑1 (MQ=255)                                                                                                                                                                           ccggccTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCAGCCGCCAACCGTCGTATTTCAGCGGGCGTGGCGGCGCAGGCCTGCACAAGGCCGCCCAGCAGGCAGATGCGGTGATCGGGGTGCGTTCGATCTGGCGtgat                                                           <  2:589154/233‑1 (MQ=255)                                                                                                                                                                                  gCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCAGCCGCCAACCGTCGTATTTCAGCGGGCGTGGCGGCGCAGGCCTGCACAAGGCCGCCCAGCAGGCAGATGCGGTGATCgggg                                                                               <  2:565509/206‑1 (MQ=255)                                                                                                                                                                                               ttCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCAGCCGCCAACCGTCGTATTTCAGCGGGCGTGGCGGCGCAGGCCTGCACAAGGCCGCCCAGCAGGCAGATGCGGTGATCGGGGTGCGTTCGATCTGGCGTGATGACCCGCTGTACCCGATGGccc                                     <  1:575807/235‑1 (MQ=255)                                                                                                                                                                                                tCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCAGCCGCCAACCGTCGTAtt                                                                                                                                              <  2:407808/129‑1 (MQ=255)                                                                                                                                                                                                   ccACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTg                                                                                                                                                                                                                                   <  2:756264/41‑1 (MQ=255)                                                                                                                                                                                                    cACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCAGCCGCCAACCGTCGTATTTCAGCGGGCGTGGCGGCGCAGGCCTGCACAAGGCCGCCCAgcaggcag                                                                                              >  2:201640/1‑173 (MQ=255)                                                                                                                                                                                                    cACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCAGCCGCCAACCGTCGTATTTCAGCGGGCGTGGCGGCGCAGGCCTGCACAAGGCCGCCCAGCAGGCAGATGCGGTGATCGGGGTGCGTTCGATCTGGCGTGATGACCCGCTGTACCCGATGGCCCGACgc                                <  1:842755/235‑1 (MQ=255)                                                                                                                                                                                                             gCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCAGCCGCCAACCGTCGTATTTCAGCGGGCGTGGCGGCGCAGGCCTGCACAAGgccgcc                                                                                                        <  2:531044/154‑1 (MQ=255)                                                                                                                                                                                                               tGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCAGCCGCCAACCGTCGTATTTCAGCGGGCATGGCGGCGCAGGCCTGCACAAGGCCGCCCAGCAGGCAGATGCGGTGATCGGGGTGCGTTCGATCTGGAGtgat                                                           <  2:801528/197‑1 (MQ=255)                                                                                                                                                                                                                       cTGCCGGTCACTCATAGCCTGgccagcgccagggtcaggtgtttgaagttcatgccgggtttccttgcaggcggggaacgagcgcgcgggccagagcggccagagcaaagcagatgccggcgaccaggatgatcgcggcccctgacggcaccggcaggtcgaaaacgatcggtagcaggatgccga                                                              >  2:1044021‑M2/1‑21 (MQ=255)                                                                                                                                                                                                                        tGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCGGCCGCCAACCGTCGTagt                                                                                                                                              >  2:132969/1‑103 (MQ=255)                                                                                                                                                                                                                           cGGTCACTCATAGCCTGgccagcgccagggtcaggtgtttgaagttcatgccgggtttccttgcaggcgggggacgg                                                                                                                                                                       <  2:211883‑M2/77‑61 (MQ=255)                                                                                                                                                                                                                           cGGTCACTCATAGCCTGgccagcgccagggtcaggtgtttgaagttcatgccgggtttccttgcaggcggggaacgagcgcgcgggccagagcggccagagcaaagcagatgccggcgaccaggatgatcgcggcccctgacggcaccggcaggtcgaaaacgatcggtagcaggatgccgaacaggg                                                        <  2:939778‑M2/188‑172 (MQ=255)                                                                                                                                                                                                                                 cTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCAGCCGCCAACCGTCGTATTTCAGCGGGCGTGGCGGCGCAGGCCTGCACAAGGCCGCCCAGCAGGCAGATGCGGTGATCGGGGTGCGTTCGATCTGGCGTGATGACCCGCTGTACCCGATGGCCCGACGCAGCAATATCCGCATTGTCGAGATCGATGcc  <  1:224657/236‑1 (MQ=255)                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                  TCGGCATCCTGCTACCGATCGTTTTCGACCTGCCGGTGCCGTCAGGGGCCGCGATCATCCTGGTCGCCGGCATCTGCTTTGCTCTGGCCGCTCTGGCCCGCGCGCTCGTTCCCCGCCTGCAAGGAAACCCGGCATGAACTTCAAACACCTGACCCTGGCGCTGGCACTGGCCGGCCTGCCGTCCCTGTCTTTCGCCACGCAAGTGCTGACGACCCTGCCGGTCACTCATAGCCTGGCCAGCGCCTTGCTCGAAGGCACTGCGGTGCAGCTCCAGCGGGCGGCACCAGCCAACCTGCCTGCCAGCCGCCAACCGTCGTATTTCAGCGGGCGTGGCGGCGCAGGCCTGCACAAGGCCGCCCAGCAGGCAGATGCGGTGATCGGGGTGCGTTCGATCTGGCGTGATGACCCGCTGTACCCGATGGCCCGACGCAGCAATATCCGCATTGTCGAGATCGATGCC  >  AE015451/4332064‑4332523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.