Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	2039460	2039718	259	19 [17]	[17] 18	[rffE]–[PP_1812]	[rffE],[PP_1812]

AGCCAGCACCGGTCGGATGCCTTGCAAGATGGCGGTGGTCACACCGGTCAGGTCCTGGCCGGCTTTCATGATGTTCAAGTCGTATTCGGGGCTGATGCCGAACAGCTCCAGTACCTGATCGAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAGGGGCACGGCAGTGATCCTCTTGCTCGGGTCCTTGAAGCAGGCCGGTTTCCATTGCTCAAAAATCTAGCAGGCGGGCAATGGCGTGCCAGTTTGTCGGGGGGAGGCTTACCGACTGGGGGA  >  AE015451/2039225‑2039593                                                                                                                                                                                                                                           |                                                                                                                                       agccagcACCGGTCGGATGCCTTGCAAGATGGCGGTGGTCACACCGGTCAGGTCCTGGCCGGCTTTCATGATGTTCAAGTCGTATTCGGGGCTGATGCCGAACAGCTCCAGTACCTGATCGAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACa                                                                                                                                        <  1:955864/235‑1 (MQ=255) agccagcACCGGTCGGATGCCTTGCAAGATGGCGGTGGTCACACCGGTCAGGTCCTGGCCGGCTTTCATGATGTTCAAGTCGTATTCGGGGCTGATGCCGAACAGCTCCAGTACCTGATCGAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACa                                                                                                                                        <  1:98193/235‑1 (MQ=255)               ggATGCCTTGCAAGATGGCGGTGGTCACACCGGTCAGGTCCTGGCCGGCTTTCATGATGTTCAAGTCGTATTCGGGGCTGATGCCGAACAGCTCCAGTACCTGATCGAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAg                                                                                                                          <  1:506774/235‑1 (MQ=255)                                gCGGTGGTCACACCGGTCAGGTCCTGGCCGGCTGTCATGATGTTCAAGACGTATTCGGGGGTGAGGCCGAACAGCTCCAGTACCTGATCGAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAggg                                                                                                                        <  1:43126/220‑1 (MQ=255)                                           acCGGTCAGGTCCTGGCCGGCTTTCATGATGTTCAAGTCGTATTCGGGGCTGATGCCGAACAGCTCCAGTACCTGATCGAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAGGGGCACGGCAGTGATCCTCTTGCTCggg                                                                                              <  1:757848/235‑1 (MQ=255)                                                                 ttCATGATTTTCAAGTCGTATTCGGGGCTGATGCCGAACAGCTCCAGTACCTGATCGAGCATTTGCCGGTGCTGGCGGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAGGGGCACGGCAGTGATCCTCTTGCt                                                                                                  <  1:525194/209‑1 (MQ=255)                                                                 ttCATGATGTTCAAGTCGTATTCGGGGCTGATGCCGAACAGCTCCAGTACCTGATCGAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAGGGGCACGGCAGTGATCGTCTTGCTCGGGTCCTTGAAGc                                                                                    <  2:990405/223‑1 (MQ=255)                                                                 ttCATGATGTTCAAGTCGTATTCGGGGCTGATGCCGAACAGCTCCAGTACCTGATCGAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAGGGGCACGGCAGTGATCGTCTTGCTCGGGTCCTTGAAGc                                                                                    >  1:990408/1‑223 (MQ=255)                                                                                                              aGTACCCGATCGAGCATTTGCCGGTGCCGGGCGGTTACGCGCACGCGGGCTTCGCGGCGGCTGTCCTGCGCCAGTTGAAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCtt                                                                                                                             <  2:454388/137‑1 (MQ=255)                                                                                                               gTACCTGATCGAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAGGGGCACGGCAGTGATCCTCTTGCt                                                                                                  <  2:770360/163‑1 (MQ=255)                                                                                                                       tCGAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTc                                                                                                                               <  2:707217/126‑1 (MQ=255)                                                                                                                         gAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAGGGGCACGGCAGTGATCCTCTTGCTCggg                                                                                              <  2:1085025/157‑1 (MQ=255)                                                                                                                             aTTGGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGATGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAGGGGCACGGCAGTGATCCTCTTGCTCGGGTCCTTGAAGCAGGCCGGTTTCCATTGCTCAAAAATCTAGCAGGCGGGCAATGGCGTGCCAGTTTGTCGGGGGGAGGCTTAc             <  2:648107/234‑1 (MQ=255)                                                                                                                                               gTGACGCACACGCGGGCTTCGAAGCGGCGGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAGGGGCACGGCAGTGATCCTCTTGCTCGGGTCCTTGAAGCAGGCCGGTTTc                                                                         <  2:185836/156‑1 (MQ=255)                                                                                                                                                                      gCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAGGGGCACGGCAGTGATCCTCTTGCTCGGGTCCTTGAAGCAGGCCGGTTTCCATTGCTCAAAAATCTAGCAGGCGGGCAATGGCGTGCCAGTTTGTCgggg                       <  1:934645/183‑1 (MQ=255)                                                                                                                                                                          cTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAGGGGCACGGCAGTGATCCTCTTGCTCGGGTCCTTGAAGCAGGCCGGTTTCCATTGCTCAAAAATCTAGCAGGCGGGCAATGGCGTGCCAGTTTGTCggggg                      <  1:758991/180‑1 (MQ=255)                                                                                                                                                                                    tcAGCTGTAGGTCTAGCGGGGCGGTGTTGGTGGGCTATGGTAGGGTGACGAAAACCGTCCGGGTCTTGAGGGGCACGGCAGTGACACTCGTGCTCGGGTCCTTCAAGCAGGCCGGTTTCCATTg                                                                    <  2:404211/123‑1 (MQ=255)                                                                                                                                                                                                             cTTGATGGCTTCGGGGCGGGTACCGAAATCAGTCAGGGTCTTGAGGGGCACGGCAGTGATCCTCTTGCTCGGGTCCTTGAAGCAGGCCGGTTTCCATTGCTCAAAAATCTAGCAGGCGGGCAATGGCGTGCCAGTTTGTCGGGGGGAGGCTTACCGACTggg     <  2:131026/162‑1 (MQ=255)                                                                                                                                                                                                                        cTGGGCGGGTACCGAAAACAGACAGGGTCTTGAGGGGCACGGCAGTGATCCTCTTGCTCGGGTCCTTGAAGCAGGCCGGTTTCCATTGCTCAAAAATCTAGCAGGCGGGCAATGGCGTGCCAGTTTGTCGGGGGGAGGCTTACCGACTGGGGGa  <  2:318767/154‑1 (MQ=255)                                                                                                                                                                                                                                           |                                                                                                                                       AGCCAGCACCGGTCGGATGCCTTGCAAGATGGCGGTGGTCACACCGGTCAGGTCCTGGCCGGCTTTCATGATGTTCAAGTCGTATTCGGGGCTGATGCCGAACAGCTCCAGTACCTGATCGAGCATTTGCCGGTGCTGGCCGGTGACGCACACGCGGGCTTCGAAGCGGCTGTCCTGCGCCAGTTGCAGGGCTAGCGGGGCCATCTTGATGGCTTCTGGGCGGGTACCGAAAACAGTCAGGGTCTTGAGGGGCACGGCAGTGATCCTCTTGCTCGGGTCCTTGAAGCAGGCCGGTTTCCATTGCTCAAAAATCTAGCAGGCGGGCAATGGCGTGCCAGTTTGTCGGGGGGAGGCTTACCGACTGGGGGA  >  AE015451/2039225‑2039593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑