Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	2039460	2039718	259	19 [17]	[17] 18	[rffE]–[PP_1812]	[rffE],[PP_1812]

CGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGT‑GGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGGGTTGGTTGCGCAGCCGAAGGAAAGCGGTTGCTGGAAAATGACCAACCCAAGGAGTGTTGACCATGCGCAATAACGTTCTGTCGTACCTGCTGCTGCCGCTGTTCGCCA  >  AE015451/2039597‑2039953                                                                                                                            |                                                                                                                                                                                                                                           cGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGGGGGCAGT‑GGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGaa                                                                                                                                                                                                                     >  2:218629/1‑146 (MQ=255)                             ggcgTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGT‑GGGTATCGGACAAACGGGGATTTGGCTACAGGCCCAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGCGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCCCCgg                                                                                                                                                   >  2:724586/1‑184 (MQ=255)                              gcgTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGT‑GGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGGGTTGGTTGCGCAGc                                                                                                >  2:562762/1‑234 (MQ=255)                                       gagaATGGCCGGGCAGTGGTGGGCAGT‑GGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCg                                                                                                                                                                  >  2:198699/1‑159 (MQ=255)                                               ccGGGCAGTGGTGGGCAGTGGGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGGGTTGGTTGCGCAGCCGAAGGAAAGCGGTTGCt                                                                              >  1:740101/1‑236 (MQ=255)                                                          tggGCAGT‑GGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGGGTTGGTTGCGCAGCCGAAGGAAAGCGGTTGCTGGAAAATGACCa                                                                  >  1:1078037/1‑236 (MQ=255)                                                                     gTATCGGACAAACGGGGGTTTTGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGGCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTa                                                                                                                                                               >  2:905956/1‑133 (MQ=255)                                                                     gTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTtg                                                                                                                                                                                                       >  2:57141/1‑93 (MQ=255)                                                                     gTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGGGTTGGTTGCGCAGCCGAAGGAAAGCGGTTGCTGGAAAATGACCAACCCAAg                                                           >  2:611975/1‑233 (MQ=255)                                                                                                          ccAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGGGTTGGTTGCGCAGCCGAAGGAAAGCGGTTGCTGGAAAATGACCAACCCAAGGAGTGTTGACCATGCGCAATAACGTTCTGTCGTACctgc                    >  1:845971/1‑235 (MQ=255)                                                                                                               gCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGCAACGGCCCCGGttt                                                                                                                                                                                                        >  2:10456/1‑50 (MQ=255)                                                                                                               gCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGCGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGGGTTGGTTGCGCAGCCGAAGGAAAGCGGTTGCTGGAAAATGACCAACCCAAGGAGTGTTGACCATGCGCAATAACGTTCTGTCGTACCtgctgctgc              >  1:504456/1‑236 (MQ=255)                                                                                                                ccTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGATTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAg                                                                                                                                              >  2:106695/1‑107 (MQ=255)                                                                                                                 cTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGGGGGTGGGTGAAGTTGAGCGTGTTGCTGACGGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACGCGCTAGGGTTGGTTGCGCAGCCGAAGGAAAGCGGTTGCTGGa                                                                           >  1:389240/1‑173 (MQ=255)                                                                                                                      gCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGGGTTGGTTGCGCAGCCGAAGGAAAGCGGTTGCTGGAAAATGACCAACCCAAGGAGTGTTGACCATGCGCAATAACGTTCTGTCGTACCTGCTGCTGCCGCTGt        >  1:976985/1‑235 (MQ=255)                                                                                                                      gCGTTCAGGGCCGGGCCGACCGGGGCGGaa                                                                                                                                                                                                                     >  2:46778/1‑30 (MQ=255)                                                                                                                           cAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGGGTTGGTTGCGCAGCCGAAGGAAAGCGGTTGCTGGAAAATGACCAACCCAAGGAGTGTTGACCATGCGCAATAACGTTCTGTCGTACCTGCTGCTGCCGCTGTTCGCCa  >  1:293861/1‑236 (MQ=255)                                                                                                                            aGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGGGTTGGTTGCGCAGCCGAAGGAAAGCGGTTGCTGGAAAATGACCAACCCAAGGAGTGTTGACCATGCGCAATAACGTTCTGTCGTACCTGCTGCTGCCGCTGTTCGcc   >  2:688917/1‑234 (MQ=255)                                                                                                                            |                                                                                                                                                                                                                                           CGGTTTACCGGGCGGGCCTTGTTCGGCGGGCGTTGTAGGAGAATGGCCGGGCAGTGGTGGGCAGT‑GGGTATCGGACAAACGGGGATTTGGCTACAGGCACAAGGCCAGGGCCTTGTGCGTTCAGGGCCGGGCCGAGCGGGGCGGAAACGGCCACGGTTTGTGGGTGGGTGAAGTTGAGCGTTTTGCTGACCGATTCGGTAACCATTCGCCGGGGTAGTTGGGTATTGTGCGGCCAGGTTACCCGCTAGGGTTGGTTGCGCAGCCGAAGGAAAGCGGTTGCTGGAAAATGACCAACCCAAGGAGTGTTGACCATGCGCAATAACGTTCTGTCGTACCTGCTGCTGCCGCTGTTCGCCA  >  AE015451/2039597‑2039953

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑