Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AE015451	486307	486478	172	18 [17]	[17] 18	[apaG]	[apaG]

TGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTGTTGCGCAGGGTCTTGCGGCGCTGGTTGAACGCTTCGCGAACGACACGCTCCA  >  AE015451/486392‑486696                                                                                        |                                                                                                                                                                                                                          tGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCcagcag                                                                                            >  2:770373/1‑215 (MQ=255)      ggggTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCAt                                                                                                        >  1:228144/1‑198 (MQ=255)          tgttgtCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCtt                                                              <  1:770376/236‑1 (MQ=255)           gttgtCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGgcggcg                                                                              >  1:568302/1‑219 (MQ=255)                 tgtgCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGAGGGGGCGCACAGGATTTGAGGGTTGTGCGATCCCTTGGGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGGCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTc                                                                         >  1:162495/1‑218 (MQ=255)                 tgtgCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGgt                                                       >  1:269944/1‑236 (MQ=255)                     ccGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTg                                                                                                            >  2:1089735/1‑179 (MQ=255)                      cGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTGTTgc                                                  >  1:143807/1‑236 (MQ=255)                                               ccTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTGTTGCGCAGGGTCTTGCGGCGCTGGTTGa                          >  1:953980/1‑235 (MQ=255)                                                 tACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTGTTGCGCAGGGTCTTGCGGCGCTGGTTGAACg                       >  1:225560/1‑236 (MQ=255)                                                     aGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGttc                                                                                                                                                                >  2:1013338/1‑94 (MQ=255)                                                           cGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTGTTGCGCAGGGTCTTGCGGCGCTGGTTGAACGCTTCGCGAAc             >  1:382530/1‑236 (MQ=255)                                                             cacaGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTGTTGCGCAGGGTCTTGCGGCGCTGGTTGAACGCTTCGCGAACGa           >  1:888400/1‑236 (MQ=255)                                                              acaGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCCGGCCTTTCATgg                                                        >  2:32411/1‑190 (MQ=255)                                                                aGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTGTTGCGCAGGGTCTTGCGGCGCTGGTTGAACGCTTCGCGAACGaca         >  1:50483/1‑235 (MQ=255)                                                                     ttGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGGCCAGCCGGCCTTTCATGGTGTTGCGCAGGGt                                           >  2:347333/1‑196 (MQ=255)                                                                      tGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTGTTGCGCAGGGTCTTGCGGCGCTGGTTGAACGCTTCGCGAACGACACGCTCca  >  1:102220/1‑236 (MQ=255)                                                                                        ttGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTGTTGCGCAGGGTCTTgcgg                                    >  2:900265/1‑184 (MQ=255)                                                                                        |                                                                                                                                                                                                                          TGGGGGGGGTGTTGTCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGGGTCGCACAGGATTTGAGGGTTGTGCGATCCCTTGTGGCCCGCGAAGAGGCCGGTACGGGCTAAATCAGGCTTGTTGCTGATCCGCCAGTTGGTCAGCCAGGCGCACGAAGGCTGCCAGGTCGAGCTGTTCAGGGCGCAGGCTGCCATCAACGCCAGCAGCCTCGATGGCGGCGCTGTCCAGCAGGCCTTTCATGGTGTTGCGCAGGGTCTTGCGGCGCTGGTTGAACGCTTCGCGAACGACACGCTCCA  >  AE015451/486392‑486696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑