New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	208966 =	NA (NA)	4 (0.110)	3/320	NT	10.2%	coding (14472/26049 nt)	PP_0168	putative surface adhesion protein
	?	AE015451	208967 =	37 (0.930)					coding (14473/26049 nt)	PP_0168	putative surface adhesion protein

GTTGCGATCGACATCACGACAGGGTCGTTGGTGCCGACGTAGACGTTGTCCGGGGCAGTCACGGTGGCAGTGCCGGTTGTACCGTTAGCCGGGATGGTGATGGTGGTTTTGCCATCGTCCAGGGTAAAGGTCAGCGCCGCATGCTTGTCGATAGGCAGACCATCTTTGTTGGTCAGCGTGATGGTGTAGGTGATCTCGCCGCCTTCGGTTaccgaagg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/209175‑208966 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAACGGTACAACCGGCACTGCCACCGTGACTGCCCCGGACAACGTCTACGTCGGCACCAACGACCCTGTCGTGATGTCGATCGCAACCGTTGGAGGTGCGGACGTCGGTAAGTTCGAGCAA  >  AE015451/208967‑209209                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTTGCGATCGACATCACGACAGGGTCGTTGGTGCCGACGTAGACGTTGTCCGGGGCAGTCACGGTGGCAGTGCCGGTTGTACCGTTAGCCGGGATGGTGATGGTGGTTTTGCCATCGTCCAGGGTAAAGGTCAGCGCCGCATGCTTGTCGATAGGCAGACCATCTTTGTTGGTCAGCGTGATGGTGTAGGTGATCTCGCCGCCTTCGGTTACCGAAGGCGGCGAGATCACCTACA                                                                                                                                                                                                                            <  1:479182/235‑1                                                                           GGTTGTACCGTTAGCCGGGATGGTGATGGTGGTGTTGCCAGCGTCCAGGGTAAAGGTCAGCGCCGCATGCTTGTCGATAGGCAGACCATCTTTGTTGGTCAGCGTGATGGTGTAGGTGATCTCGCCGCCTTCGGTTACCGAAGGC                                                                                                                                                                                                                                            <  2:176164/145‑1                                                                                                                      TCCAGGGTAAAGGTCAGCGCCGCATGCTTGTCGATAGGCAGACCATCTTTGTTGGTCAGCGTGATGGTGTAGGTGATCTCGCCGCCTTCGGTTACCGAAGGCGGCG                                                                                                                                                                                                                                        <  1:519813/106‑1                                                                                                                                            CATGCTTGTCGATAGGCAGACCATCTTTGTTGGTCAGCGTGATGGTGTAGGTGATCTCGCCGCCTTCGGTTACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGC                                                                                                                                                                           <  1:570004/145‑1                                                                                                                                               GCTTGTCGATAGGCAGACCATCTTTGTTGGTCAGCGTGATGGTGTAGGTGATCTCGCCGCCTTCGGTTACCGTAGGCGGCGAGATCACCTACACCATCACGCTGAC                                                                                                                                                                                                               <  2:358661/106‑1                                                                                                                                                           cCAGACCATCTTTGTTGGTCAGCGTGATGGTGTAGGTGATCTCGCCGCCTTCGGTTACCGAAGGCGGCGAGATCACCTACA                                                                                                                                                                                                                            <  2:367421/80‑1                                                                                                                                                                                    GATGGTGTAGGTGATCTCGCCGCCTTCGGTTACCGA                                                                                                                                                                                                                                                >  2:438477/1‑36                                                                                                                                                                                                                 tacCCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTTCCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAACGGTACAACCGGCACTGCCACCGTGACTGCCCCGGACAACGTCTACGTCGGCACCAA                                                               <  1:123780/181‑1                                                                                                                                                                                                                   ACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAACGGTACAACCGGCACTGCCACCG                                                                                                 <  1:340105/148‑1                                                                                                                                                                                                                     CGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAACGGTACAACCGGCACTGCCACCGTGACTGCCCCGGACAACGTCTACGTCGGCACCAACGACCCTGTCGTGATGTCGATCGCAACCGTTGGAGGTGCGGACGTCGGTAAGTTC        <  1:435634/235‑1                                                                                                                                                                                                                       AAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAACGGTACAACCGGCACTGCCACCGTGACTGCCCCGGACAACGTCTACGTCGGCACCAACGACCCTGTCGTGATGTCGATCGCAACCGTTGGAGGTGCGGACGTCGGTAAGTTCct      >  1:5989/1‑233                                                                                                                                                                                                                          GCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAACGGTACAACCGGCACTGCCACCGTGACTGCCCCGGACAACGTCTACGTCGGCACCAACGACCCTGTCGTGATGTCGATCGCAACCGTTGGAGGTGCGGACGTCGGTAAGTTCGAGCAA  >  1:508423/1‑236                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTTGCGATCGACATCACGACAGGGTCGTTGGTGCCGACGTAGACGTTGTCCGGGGCAGTCACGGTGGCAGTGCCGGTTGTACCGTTAGCCGGGATGGTGATGGTGGTTTTGCCATCGTCCAGGGTAAAGGTCAGCGCCGCATGCTTGTCGATAGGCAGACCATCTTTGTTGGTCAGCGTGATGGTGTAGGTGATCTCGCCGCCTTCGGTTaccgaagg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/209175‑208966 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAACGGTACAACCGGCACTGCCACCGTGACTGCCCCGGACAACGTCTACGTCGGCACCAACGACCCTGTCGTGATGTCGATCGCAACCGTTGGAGGTGCGGACGTCGGTAAGTTCGAGCAA  >  AE015451/208967‑209209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.