New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	208966 =	NA (NA)	4 (0.110)	3/320	NT	10.2%	coding (14472/26049 nt)	PP_0168	putative surface adhesion protein
	?	AE015451	208967 =	37 (0.930)					coding (14473/26049 nt)	PP_0168	putative surface adhesion protein

CGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAACGGTACAACCGGCACTGCCACCGTGACTGCCCCGGACAACGTCTACGTCGGCACCAACGACCCTGTCGTGATGTCGATC  >  AE015451/208774‑209170                                                                                                                                                                                                 |                                                                                                                                                                                                             cgcgcCGTACACCCACGCTGCGCAGGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACcaac                                                                                                                                                                    <  1:375357/235‑1 (MQ=31)                   tGCGCAGGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCg                                                                                                                                                 <  1:505075/236‑1 (MQ=33)                               tGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATgcg                                                                                                                                      <  1:530658/235‑1 (MQ=38)                                      tACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATgcggc                                                                                                                                    <  1:404929/230‑1 (MQ=39)                                            gATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCg                                                                                                                                                 >  1:547489/1‑211 (MQ=33)                                              tGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTAccc                                                                                                                      >  1:628945/1‑236 (MQ=255)                                                   gCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCCACCCCTTCGGTAACCTAAGGCGGAGAGATCACTTACACCATCACGc                                                                                                                                                                            >  2:397719/1‑177 (MQ=9)                                                      aGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACGTACACCATCACGCTGACCAACaaa                                                                                                                                                                 >  2:347266/1‑185 (MQ=14)                                                      aGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGAcc                                                                                                                                                                       >  2:103889/1‑179 (MQ=31)                                                      aGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGAcc                                                                                                                                                                       <  1:103889/179‑1 (MQ=31)                                                         tCAGCCTGGGCATCCACTCGGCGGTGGACGCCACTGGCGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAACGTGCATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGc                                                                                                           <  1:521800/236‑1 (MQ=255)                                                                    aTCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGAc                                                                                                                                                                        <  2:726297/164‑1 (MQ=32)                                                                    aTCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGAc                                                                                                                                                                        >  1:726298/1‑164 (MQ=31)                                                                      cAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGAGCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACcaaca                                                                                                                                                                   <  1:726675/167‑1 (MQ=14)                                                                        aCTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACcaccatcacc                                                                                            <  1:426490/236‑1 (MQ=255)                                                                              cggTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATc                                                                                                                                                  >  2:671132/1‑176 (MQ=33)                                                                              cggTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCg                                                                                      <  1:67756/236‑1 (MQ=255)                                                                              cggTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCg                                                                                      <  1:449786/236‑1 (MQ=255)                                                                                         tcTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGAt                                                                                                                                                              <  2:547488/152‑1 (MQ=17)                                                                                            gctGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGAc                                                                                                                              <  2:267203/180‑1 (MQ=255)                                                                                              tGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAACGGTACAACCg                                                                      <  1:224258/236‑1 (MQ=255)                                                                                                  aCCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGa                                                                                                                               <  1:624990/175‑1 (MQ=255)                                                                                                          gaACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCt                                                                                   >  1:504444/1‑211 (MQ=255)                                                                                                          gaACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAACGGCACCACCGGCACTGCCACCg                                                          >  1:708355/1‑236 (MQ=255)                                                                                                               tCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCg                                                                                      <  1:389578/203‑1 (MQ=255)                                                                                                                    cggggCGGTGCCGCGAAGGTGGATGTCACCGACGCCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGa                                                                                                                               <  2:175275/155‑1 (MQ=255)                                                                                                                     tGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATcc                                                                                        >  2:291293/1‑195 (MQ=255)                                                                                                                          ggTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGc                                                                                                                                                       >  1:268469/1‑127 (MQ=17)                                                                                                                          ggTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCCACCCCTTCGGTAACCGAAGGCGGTGAGATCACTTACACCATCACGCTGACCAACAAAGACGGTCTGc                                                                                                                                                       <  2:268468/127‑1 (MQ=11)                                                                                                                                    aGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCGATCAACAAGCACGCGGCGCTGACCTTCACCCTGGACGACGGCAACACcaccatca                                                                                              >  2:106972/1‑174 (MQ=14)                                                                                                                                         gATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAACGGTACAACCGGCACTGCCACCGTGACTGCCCCGGACAACGTCTACGTCGGCAc                           <  1:382988/236‑1 (MQ=33)                                                                                                                                         caccttcgcggcaccacCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAACGGTACAACCGGCACTGCCACCGTGACTGCCCCGGACAACGTCTACGTCGGCAc                           <  1:484133/225‑1 (MQ=14)                                                                                                                                                ccGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCgg                                                                                     <  2:250333/171‑1 (MQ=31)                                                                                                                                                 cGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAACGGTACAACCGGCACTGCCACCGTGACTGCCCCGGACAACGTCTACGTCGGCACCAACGa                     <  2:628944/234‑1 (MQ=31)                                                                                                                                                  gACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCt                                                                                                                            >  2:174681/1‑130 (MQ=32)                                                                                                                                                          cgacgaAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCTATCGACAACCATGCGGCGCTGACCTTCACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCCAACggca                                                                            >  2:695661/1‑168 (MQ=255)                                                                                                                                                                  tggtggCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAACGGTACAACCGGCACTGCCACCGTGACTGCCCCGGACAACGTCTACGTCGGCACCAACGACCCTGTCGTGATGTCGATc  <  1:287014/236‑1 (MQ=11)                                                                                                                                                                                                 |                                                                                                                                                                                                             CGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTCGAGCTGGGCGGTGCCGCGAAGGTGGATGTCACCGACACCACCGACGAAGTGGTGGCCAAGCTGACCGCGACCCCTTCGGTAACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGATGGTCTGCCTATCGACAAGCATGCGGCGCTGACCTTTACCCTGGACGATGGCAAAACCACCATCACCATCCCGGCTAACGGTACAACCGGCACTGCCACCGTGACTGCCCCGGACAACGTCTACGTCGGCACCAACGACCCTGTCGTGATGTCGATC  >  AE015451/208774‑209170

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.