New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	514686 =	38 (0.950)	3 (0.080)	3/318	NT	7.1%	coding (398/1041 nt)	PP_0426	conserved membrane protein of unknown function
	?	AE015451	515222 =	43 (1.140)					coding (520/648 nt)	coq	2‑nonaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol hydroxylase

GATCATGGCGGCAATGGGCTGGTTGCTCACCGAGGCATGGATGAGCCTCGGTGACGGCGCGCTGTTGATCATCGCCAGCCTCTATATCCTGCTGATCACCTTGTTCGCCCTCCATCTGCAACGCCGCGTCCAGCCCGTCGCTGCTGGCGTGCTGGCAGCAGTAGCCGTCAGCATCGTGCCGCTGGCGGTATTCGCTATCGAACGCATGCTCGGCTGGTGGCCACTGGACGATGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/514922‑514686 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatgcgcaTCTGCTCGAGAATGGCCCGGGATTTTTCATCTTCGTGCGGGAGCTGCTCCAGGTGCTCGTCGAGGTGCTTGCACACCTGATGTTCGGTAGCGGCGACGAAGCCCAGGCTGACCTTGTCGCTGACCAGCCCGGCCAGTGCGCCAATGCCGAACGACATGCCGTAGAACAGAGGGTTGAGCACGCTCGGGTGGCTGTTCAGCTGGCGAATGCGCTGTTCGCACCAGGCCAGGTG  >  AE015451/515222‑515453                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GATCATGGCGGCAATGGGCTGGTTGCTCACCGAGGCATGGATGAGCCTCGGTGACGGCGCGCTGTTGATCATCGCCAGCCTCTATATCCTGCTGATCACCTTGTTCGCCCTCCATCTGCAACGCCGCGTCCAGCCCGTCGCTGCTGGCGTGCTGGCAGCAGTAGCCGTCAGCATCGTGCCGCTTGCGGTATTCGCTATCGAACGCATGCTCGGCTGGTGGCCACTGGACGATGCGC                                                                                                                                                                                                                                           <  1:430928/236‑1                                       GGATGAGCCTCGGTTACGGCGCGCTGTTGATCATCGCCAGCCTCTATATCCTGCTGATCACCTTGTTCGCCCTCCATCTGCAACGCCGCGTCCAGCCCGTCGCTGCTGGCGTGCTGGCAGCAGTAGCCGTCAGCATCGTGCCGCTGGCGGTATTCGCTATCGAACGCATGCTCGGCTGGTGGCCACTGGACGAT                                                                                                                                                                                                                                               <  2:405601/194‑1                                                                                                   CCTTGTTCGCCCTCCATCTGCAACGCCGCGTCCAGCCCGTCGCTGCTGGCGTGCTGGCAGCAGTAGCCGTCAGCATCGTGCCGCTGGCGGTATTCGCTATCGAACGCATGCTCGGCTGGTGGCCACTGGACGATGCGCATCTGCTCGAGAATGGCCCGGGATTTTTCATCTTCGTGCGGGAGCTGCTCCAGGTGCTCGTCGAGGTGCTTGCACACCTGATGTTCGGTAGCGGC                                                                                                                                            <  1:275477/233‑1                                                                                                                                                                                                          ACGCATGCTCGGCTGGTGGCCACTGGACGATGCGCATCTGCTCGAGAATGGCCCGGGATTTTTCAT                                                                                                                                                                                                            <  1:610599/66‑1                                                                                                                                                                                                          ACGCATGCTCGGCTGGTGGCCACTGGACGATGCGCATCTGCTCGAGAATGGCCCGGGATTTTTCAT                                                                                                                                                                                                            >  2:610598/1‑66                                                                                                                                                                                                                                     CGATGCGCATCTGCTCGAGAATGGCCCGGGATTTTTCATCTTCGTGCGGGAGCTGCTCCAGGTGCTCGTCGAGGTGCTTGCACACCTGATGTTCGGTAGCGGCGACGAAGCCCAGGCTGACCTTGTCGCTGACCAGCCCGGCCAGTGCGCCAATGCCGAACGACATGCCGTAGAACAGAGGGTTGAGCACGCTCGGGTGGCTGTTCAGCTGGCGAATGCGCTATTCGCACCAGGCC       <  1:513496/236‑1                                                                                                                                                                                                                                     CGATGCGCATCTGCTCGAGAATGGCCCGGGATTTTTCATCTTCGTGCGGGAGCTGCTCCAGGTGCTCGTCGAGGTGCTTGAACACCTGATGTTCGGTCGCGGCGACGAAGCCCAGGCTGACCTTGTCG                                                                                                                   >  2:189399/1‑128                                                                                                                                                                                                                                          CGCATCTGCTCGAGAATGGCCCGGGATTTTTCATCTTCGTGCGGGAGCTGCTCCAGGTGCTCGTCGAGGTGCTTGCACACCTGATGTTCGGTAGCGGCGACGAAGCCCAGGCTGACCTTGTCGCTGACCAGCCCGGCCAGTGCGCCAATGCCGAACGACATGCCGTAGAACAGAGGGTTGAGCACGCGCGGGTGGCTGTTCAGCTGGCGAATGCGCTGTTCGCACCAGGCCAGGT   >  1:628133/1‑235                                                                                                                                                                                                                                           GCAGCTGCTCGAGAATGGCCCGGGATTTTTCATCTTCGTGCGGGAGCTGCTCCAGGTGCTCGTCGAGGTGCTTGCACACCTGATGTTCGGTAGCGGCGACGAAGCCCAGGCTGACCTTGTCGCTGACCAGCCCGGCCAGTGCGCCAATGCCGAACGACATGCCGTAGAACAGAGGGTTGAGCACGCTCGGGTGGCTGTTCAGCTGGCGAATGCGCTGTTCGCACCAGGCCAGGTG  <  1:514995/235‑1                                                                                                                                                                                                                                             ATCTGCTCGAGAATGGCCCGGGATTTTTCATCTTCGTGCGGGAGCTGCTCCAGGTGCTCGTCGAGGTGCTTGCACACCTGATGTTCGGTAGCGGCGACGAAGCCCAGGCTGACCTTGTCGCTGACCAGCCCGGCCAGTGCGCCAATGCCGAACGACATG                                                                            <  2:165624/159‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GATCATGGCGGCAATGGGCTGGTTGCTCACCGAGGCATGGATGAGCCTCGGTGACGGCGCGCTGTTGATCATCGCCAGCCTCTATATCCTGCTGATCACCTTGTTCGCCCTCCATCTGCAACGCCGCGTCCAGCCCGTCGCTGCTGGCGTGCTGGCAGCAGTAGCCGTCAGCATCGTGCCGCTGGCGGTATTCGCTATCGAACGCATGCTCGGCTGGTGGCCACTGGACGATGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/514922‑514686 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatgcgcaTCTGCTCGAGAATGGCCCGGGATTTTTCATCTTCGTGCGGGAGCTGCTCCAGGTGCTCGTCGAGGTGCTTGCACACCTGATGTTCGGTAGCGGCGACGAAGCCCAGGCTGACCTTGTCGCTGACCAGCCCGGCCAGTGCGCCAATGCCGAACGACATGCCGTAGAACAGAGGGTTGAGCACGCTCGGGTGGCTGTTCAGCTGGCGAATGCGCTGTTCGCACCAGGCCAGGTG  >  AE015451/515222‑515453

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.