New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1039478	42 (1.050)	3 (0.080)	3/304	NT	7.1%	intergenic (‑84/‑166)	PP_0897/PP_0899	Fumarate hydratase, class I/putative Ferredoxin reductase
	?	AE015451	= 1039462	40 (1.110)					intergenic (‑68/‑182)	PP_0897/PP_0899	Fumarate hydratase, class I/putative Ferredoxin reductase

CGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGATCACGGTCATGCAGCGCGCTCCTCTTAAAGACGGGAACATTCAAAAAGACGCTCGACATAGCCGACCAGCACGTCGAAGCGCCTTGCAAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1039230‑1039478 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccttgcaaggcgcTTCGACGTGCTGGTCGGCTATGTCGAGCGTCTTTTTGAATGTTCCCGTCTTTAAGAGGAGCGCGCTGCATGACCGTGATCAAGCAAGACGACCTGATTCAGAGCGTCGCCGACGCCCTGCAATTCATCTCGTACTACCACCCCGTCGATTTCATCCAGGCCATGCACGAGGCCTATCTGCGTGAGGAATCGCCTGCTGCACGCGATTCCATCGCCCAGATCCTGATCAACTCG  <  AE015451/1039462‑1039230                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGATCACGGTCATGCAGCGCGCTCCTCTTAAAGACGGGAACATTCAAAAAGACGCTCGACATAGCCGACCAGCACGTCGAAGCG                                                                                                                                                                                                                                                        >  1:564975/1‑236                                                                                                                                 CGCTCTGAATCAGGTCGTCTTGCTTGATCACGGTCATGCAGCGCGCTCCTCTTAAAGACGGGAACATTCAAAAAGACGCTCGACATAGCCGACCAGCACGTCGAAGCGCCTTGCAAGGCGCTTCGACGTGCTGGTCGGCTAT                                                                                                                                                                                                                      <  2:123673/142‑1                                                                                                                                                                              ataagagacagGACGGGAACATTCAAAAAGACGCTCGACATAGCCGACCAGCACGTCGAAGCGCCTTGCAAGGCGCTTCGACGTGCTGGTCGGCTATGTCGAGCGTCTTTTTGAATGTTCCCGTCTTTAAGAGGAGCGCGCTGCATGACCGTGATCAAGCAAGACGACCTGATTCAGAGCGTCGCCGACGCCCTGCAATTCATCTCGTACTACCACCCCGTCGATTTCATCCAGG                                                                            <  1:720612/224‑1                                                                                                                                                                                                       AAAAGACGCTCGACATAGCCGACCAGCACGTCGAAGCGCCTTGCAAGGCGCTTCGACGTGCTGGTCGGCTATGTCGAGCGTCTTTTTGAATGTTCCCGTCTTTAAGAGGAGCGCGCTGCATGACCGTGATCAAGCAAGACGACCTGATTCAGAGCGTCGCCGACGCC                                                                                                                       >  2:720611/1‑167                                                                                                                                                                                                                                                        GCTTCGACGTGCTGGTCGGCTATGTCGAGCGTCTTTTTGAATGTTCCCGTCTTTAAGAGGAGCGCGCTGCATGACCGTGATCAAGCAAGACGACCTGATTCAGAGCGTCGCCGACGCCCTGCAATTCATCTCGTACTACCACCCCGTCGATTTCATCCAGGCCATGCACGAGGCCTATCTGCGTGAGGAATCGCCTGCTGCACGCGATTCCATCGCCCAGATCCTGATCAACTCG  <  1:622811/235‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CGAGTTGATCAGGATCTGGGCGATGGAATCGCGTGCAGCAGGCGATTCCTCACGCAGATAGGCCTCGTGCATGGCCTGGATGAAATCGACGGGGTGGTAGTACGAGATGAATTGCAGGGCGTCGGCGACGCTCTGAATCAGGTCGTCTTGCTTGATCACGGTCATGCAGCGCGCTCCTCTTAAAGACGGGAACATTCAAAAAGACGCTCGACATAGCCGACCAGCACGTCGAAGCGCCTTGCAAGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1039230‑1039478 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccttgcaaggcgcTTCGACGTGCTGGTCGGCTATGTCGAGCGTCTTTTTGAATGTTCCCGTCTTTAAGAGGAGCGCGCTGCATGACCGTGATCAAGCAAGACGACCTGATTCAGAGCGTCGCCGACGCCCTGCAATTCATCTCGTACTACCACCCCGTCGATTTCATCCAGGCCATGCACGAGGCCTATCTGCGTGAGGAATCGCCTGCTGCACGCGATTCCATCGCCCAGATCCTGATCAACTCG  <  AE015451/1039462‑1039230

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.