New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1042953 =	44 (1.100)	4 (0.110)	4/316	NT	8.9%	coding (763/1311 nt)	colS	integral membrane sensor signal transduction histidine kinase
	?	AE015451	1043012 =	41 (1.090)					coding (822/1311 nt)	colS	integral membrane sensor signal transduction histidine kinase

TGCCCATCACCGACTGCAGGAAGGTGGCGTTGTACAGCACAGGGCTAGCGCTCACGCGGCCATCGAAATACAGGGTGAGGCCTTTCTGTTCGATGGTGTCACGCCACACCCCGATGAGCTCGTCGGCCACTTCGCGCAGGGTCGCCCGTGACGCCACTGCCCCCTCATCACGCTGCGCGCGGGCCAACATGAGGAAGGTCTTGACCAGCTCGCGCATCTCTTCGGTGGCCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1043187‑1042953 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcccgcgcGCAGCGTGATGAGGGGGCAGTGGCGTCACGGGCGACCCTGCGCGAAGTGGCCGACGAGCTCATCGGGGTGTGGCGTGACACCATCGAACAGAAAGGCCTCACCCTGTATTTCGATGGCCGCGTGAGCGCTAGCCCTGTGCTGTACAACGCCACCTTCCTGCAGTCGGTGATGGGCAACCTGCTGCGCAATGCGGCG  >  AE015451/1043012‑1043207                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGCCCATCACCGACTGCAGGAAGGTGGCGTTGTACAGCACAGGGCTAGCGCTCACGCGGCCATCGAAATACAGGGTGAGGCCTTTCTGTTCGATGGTGTCACGCCACACCCCGATGAGCTCGTCGGCCACTTCGCGCAGGGTCGCCCGTGACGCCACTGCCCCCTCATCACGCTGCGCGCGGGCCAACATGAGGAAGGTCTTGACCAGCTCGCGCATCTCTTCGGTGGCCCGCG                                                                                                                                                                                                       >  2:418720/1‑234                GCAGGAAGGTGGCGTTGTACAGCACAGGGCTAGCGCTCACGCGGCCATCGAAATACAGGGTGAGGCCTTTCTGTTCGATGGTGTCACGCCACACCCCGATGAGCTCGTCGGCCACTTCGCGCAGGGTCGCCCGTGACGCCACTGCCCCCTCATCACGCTGCGCGCGGGCCAACATGAGGAAGGTCTTGACCAGCTCGCGCATCTCTTCGGTG                                                                                                                                                                                                              >  1:7966/1‑212                                                                                                      CGCCACACCCCGATGAGCTCGTCGGCCACTTCGCGCAGGGTCGCCCGTGACGCCACTGCCCCCTCATCACGCTGCGCGCGGGCCAACATGAGGAAGGTCTTGACCAGCTCGCGCATCTCTTCGGTGGCCCGCGCGCAGCGTGATGAGGGGGCAGTGGCGTCACGGGCGACC                                                                                                                                                                 <  1:447507/171‑1                                                                                                                                                                       agCACGCTGCGCGCGGGCCAACATGAGGAAGGTCTTGACCAGCTCGCGCGTCTCTTCGGT                                                                                                                                                                                                               <  2:64915/58‑1                                                                                                                                                                               tgGCGCGGGCCAACATGAGGAAGGTCTTGACCAGCTCGCGCATCTCTTCGGTGGCCCGCGCGCAGCGTGATGAGGGGGCAGTGGCGTCACGGGCGACCCTGCGCGAAGTGGCCGACGAGCTCATCGGGGTGTGGCGTGACACCATCGAACAGAAAGGCCTCACCCTGTATTTCGATGGCCGCGTGAGCGCTAGCCCTGTGCTGTACAACGCCACCTTCCTGCAGTCGGTGATGG                         <  2:628453/232‑1                                                                                                                                                                                         CAACATGAGGAAGGTCTTGACCAGCTCGCGCATCTCTTCGGTGGCCCGCGCGCAGCGTGATGAGGGGGCAGTGGCGTCACGGGCGACCCTGCGCGAAGTGGCCGACGAGCTCATCGGGGTGTGGCGTGACACCATCGAACAGAAAGGCCTCACCCTGTATTTCGATGGCCGCGTGAGCGCTAGCCCTGTGCTGTACAACGCCACCTTCCTGCA                                    >  2:612247/1‑213                                                                                                                                                                                                    AGGTCTTGACCAGCTCGCGCATCTCTTCGGTGGCCCGCGCGCAGCGTGATGAGGGGGCAGTGGCGTCACGGGCGACCCTGCGCGAAGTGGCCGACGAGCTCATCGGGGTGTGGCGTGACACCATCGAACAGAAAGGCCTCACCCTGTATTTCGATGGCCGCGTGAGCGCTAGCCCTGTGCTGTACAACGCCACCTTCCTGCAGTCGGTGATGGGCAACCTGCTGCGCAATGCGGCG  <  1:612248/236‑1                                                                                                                                                                                                                                     CCCGCGCGCAGCGTGATGAGGGGGCAGTGGCGTCACGGGCGACCCTGCGCGAAGTGGCCGACGAGCTCATCGGGGTGTGGCGTGACACCATCGAACAGAAAGGCCTCACCCTGTATTTCGATGGCCGCGTGAGCGCTAGCCCTGTGCTG                                                        >  2:701112/1‑149                                                                                                                                                                                                                                       CGCGCGCAGCGTGATGAGGGGGCAGTGGCGTCACGGGCGACCCTGCGCGAAGTGGCCGACGAGCTCATCGGGGTGTGGCGTGACACCATCGAACAGAAAGGCCTCACCCTGTATTTCGATGGCCGCGTGAGCGCTAGCCCTGTGCTGTACAACGCCACCTTCCTGCAGTCGGTGATGGGCAACCTGCTGCGCAATGCGG    <  1:262795/199‑1                                                                                                                                                                                                                                       CGCGCGCAGCGTGATGAGGGGGCAGTGGCGTCACGGGCGACCCTGCGCGAAGTGGCCGACGAGCTCATCGGGGTGTGGCGTGACACCATCGAACAGAAAGGCCTC                                                                                                  >  2:63673/1‑105                                                                                                                                                                                                                                        GCGCGCAGCGTGATGAGGGGGCAGTGGCGTCACGGGCGACCCTGCGCGAAGTGGCCGACGAGCTCATCGGGGTGTGGCGTGACACCATCGAACAGAAAGGCCTCACCCTGTATTTCGATGGCCGCGGGAGCGCTAGCCCTGCGCTGTACAACGCCACCTTCCTGCAGTCGGT                              >  1:159386/1‑172                                                                                                                                                                                                                                           CGCAGCGTGATGAGGGGGCAGTGGCGTCACGGGCGACCCTGCGCGAAGTGGCCGACGAGCTCATCGGGGTGTGGCGTGACACCATCGAACAGAAAGGCCTCACCCTGTATTTCGATGGCCGCGTGAGCGCTAGCCCTGTGCTGTACAACGCCACCTTCCTGCAGTCGGTGATGG                         <  1:294683/174‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGCCCATCACCGACTGCAGGAAGGTGGCGTTGTACAGCACAGGGCTAGCGCTCACGCGGCCATCGAAATACAGGGTGAGGCCTTTCTGTTCGATGGTGTCACGCCACACCCCGATGAGCTCGTCGGCCACTTCGCGCAGGGTCGCCCGTGACGCCACTGCCCCCTCATCACGCTGCGCGCGGGCCAACATGAGGAAGGTCTTGACCAGCTCGCGCATCTCTTCGGTGGCCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1043187‑1042953 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcccgcgcGCAGCGTGATGAGGGGGCAGTGGCGTCACGGGCGACCCTGCGCGAAGTGGCCGACGAGCTCATCGGGGTGTGGCGTGACACCATCGAACAGAAAGGCCTCACCCTGTATTTCGATGGCCGCGTGAGCGCTAGCCCTGTGCTGTACAACGCCACCTTCCTGCAGTCGGTGATGGGCAACCTGCTGCGCAATGCGGCG  >  AE015451/1043012‑1043207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.