Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
JC | AE015451 | 1,044,759 | Δ21 bp | 7.5% | coding (467‑487/702 nt) | PP_0904 → | InaA protein |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | = 1044758 | 42 (1.050) | 3 (0.080) | 3/324 | NT | 7.5% | coding (466/702 nt) | PP_0904 | InaA protein |
? | AE015451 | 1044780 = | 33 (0.860) | coding (488/702 nt) | PP_0904 | InaA protein |
ACAGTTTCGAGCAGTTGGGCGTGCGTGTACCGCGCATCGTCTTCTGTGGCGCGCAGCGCGATGCCGAGCACCAGTGGCGCGCGCTGCTGGTCAGCGAAGCGCTGGACGGTTTTGTCGAACTCGACACCTGGCATGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/1044522‑1044758 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcacgTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCAATGACGCGGAATGGCGGACGCTGCTCTACTTTTACAAGATGGCGTTTGGCAGCGCTGTCAAA > AE015451/1044780‑1044982 ACAGTTTCGAGCAGTTGGGCGTGCGTGTACCGCGCATCGTCTTCTGTGGCGCGCAGCGCGATGCCGAGCACCAGTGGCGCGCGCTGCTGGTCAGCGAAGCGCTGGACGGTTTTGTCGAACTCGACACCTGGCATGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCAC < 1:333266/236‑1 ACAGTTTCGAGCAGTTGGGCGTGCGTGTACCGCGCATCGTCTTCTGTGGCGCGCAGCGCGATGCCGAGCACCAGTGGCGCGCGCTGCTGGTCAGCGAAGCGCTGGACGGTTTTGTCGAACTCGACACCTGGCATGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCAC < 1:637487/236‑1 ACAGTTTCGAGCAGTTGGGCGTGCGTGTACCGCGCATCGTCTTCTGTGGCGCGCAGCGCGATGCCGAGCACCAGTGGCGCGCGCTGCTGGTCAGCGAAGCGCTGGACGGTTTTGTCGAACTCGACACCTGGCATGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCAC < 1:663485/236‑1 GTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCAATGACGCGGAATGGCGGACGC > 1:688191/1‑235 CATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCAAT > 2:426312/1‑210 ACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCAATGACGCGGAATGGCGGACGCTGCTCTACTTTTACAAGATGGCGTTTGGCAGCGCTGT < 1:426313/235‑1 CACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCAATGACGCGGAATGGCGGACGCTGCTCTACTTTTACAAGATGGCGTTTGGCAGCGCTGTCAAA > 1:599561/1‑207 ACAGTTTCGAGCAGTTGGGCGTGCGTGTACCGCGCATCGTCTTCTGTGGCGCGCAGCGCGATGCCGAGCACCAGTGGCGCGCGCTGCTGGTCAGCGAAGCGCTGGACGGTTTTGTCGAACTCGACACCTGGCATGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/1044522‑1044758 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcacgTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCAATGACGCGGAATGGCGGACGCTGCTCTACTTTTACAAGATGGCGTTTGGCAGCGCTGTCAAA > AE015451/1044780‑1044982 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |