| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | AE015451 | 1,044,759 | Δ21 bp | 7.5% | coding (467‑487/702 nt) | PP_0904 → | InaA protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 1044758 | 42 (1.050) | 3 (0.080) | 3/324 | NT | 7.5% | coding (466/702 nt) | PP_0904 | InaA protein |
| ? | AE015451 | 1044780 = | 33 (0.860) | coding (488/702 nt) | PP_0904 | InaA protein | |||||
GTGTACCGCGCATCGTCTTCTGTGGCGCGCAGCGCGATGCCGAGCACCAGTGGCGCGCGCTGCTGGTCAGCGAAGCGCTGGACGGTTTTGTCGAACTCGACACCTGGCATGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCAATGACGCGGAATGGCGGACGCTGCTCTACTTTTACAAGATGGCGTTTGGCAGCGCTGTCAAAGGGTTAGAGTAATGAAACTAGAAATTGCTCGA > AE015451/1044546‑1045014 | gtgtACCGCGCATCGTCTTCTGTGGCGCGCAGCGCGATGCCGAGCACCAGTGGCGCGCGCTGCTGGTCAGCGAAGCGCTGGACGGTTTTGTCGAACTCGACACCTGGCATGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGt > 1:450615/1‑235 (MQ=255) cgtCGTCTTCTGTGGCGGGCAGCGCGATGCCGAGCACCAGTGGCGCGCGCTGCTGGTCAGCGAAGCGCTGGACGGTTTTGTCGAACTCGACACCTGGCATGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTAt < 1:567022/225‑1 (MQ=255) gATGCCGAGCACCAGTGGCGCGCGCTGCTGGTCAGCGAAGCGCTGGACGGTTTTGTCGAACTCGACACCTGGCATGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGccc > 1:186254/1‑235 (MQ=255) aCCAGTGGCGCGCGCTGCTGGTCAGCGAAGCGCTGGACGGTTTTGTCGAACTCGACACCTGGCATGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGcc > 1:571704/1‑224 (MQ=255) gcgcgcgcTGCTGGTCAGCGAAGCGCTGGACGGTTTTGTCGAACTCGACACCTGGCATGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCgctgc < 1:474883/236‑1 (MQ=255) gctgctGGTCAGCGAAGCGCTGGACGGTTTTGTCGAACTCGACACCTGGCATGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATGaa > 2:543148/1‑186 (MQ=255) ctgctgGTCAGCGAAGCGCTGGACGGTTTTGTCGAACTCGACACCTGGCATGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCg < 1:623634/196‑1 (MQ=255) tgctgGTCAGCGAAGCGCTGGACGGTTTTGTCGAACTCGACACCTGGCATGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTg > 1:395392/1‑236 (MQ=255) ctgGTCAGCGAAGCGCTGGACGGTTTTGTCGAACTCGACACCTGGCATGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTAt > 2:498829/1‑175 (MQ=255) aGCGCTGGACGGTTTTGTCGAACTCGACACCTGGCATGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAgg > 1:137955/1‑173 (MQ=255) aGCGCTGGACGGTTTTGTCGAACTCGACACCTGGCATGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAggc > 1:662706/1‑236 (MQ=255) gcgcTGGACGGTTTTGTCGAACTCGACACCTGGCATGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCt < 2:144296/221‑1 (MQ=255) aCGGTTTTGTCGAACTCGACACATGGCATGGCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGGACATGGGGCACTGGCAGCACGGCTGCCTGTAGGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCa < 1:330327/184‑1 (MQ=255) tGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATg > 2:453037/1‑233 (MQ=255) ccGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGAGCGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGc < 2:430167/184‑1 (MQ=255) aGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCt < 1:201194/229‑1 (MQ=255) cGCAAGTGGTGCATGAGCGCCTGCTCAAGGGCCTGGCGGACAACCTGGCGCGCATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCAGCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGctgctg < 2:220392/155‑1 (MQ=255) aggtggtgCCTGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAAt < 2:251897/201‑1 (MQ=255) aGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCa < 1:108789/236‑1 (MQ=255) tgCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATtcgtc > 1:265930/1‑226 (MQ=255) cATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTCTGGCCAGCACGTATTCATCCAGGTAATTGGCGAAGGc > 2:7378/1‑114 (MQ=255) gAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCAATGACGCGGa > 1:55722/1‑236 (MQ=255) gCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCAATGACGCGGAATGGCg > 1:370042/1‑234 (MQ=255) cTCAAGGACCTGGCGGACAACCTGGCGCGGATGGACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCAATGACGCGGAATGGCgg < 2:532315/234‑1 (MQ=255) tCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTgg > 1:175407/1‑123 (MQ=255) gtggtgcatgagcgcatgctcaaggacctggcggacaacctggcgcggatgcacctggggcactggcagcacgTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCAATGACGCGGAATGGCGGACgc > 1:688191‑M2/74‑235 (MQ=255) catgagcgcatgctcaaggacctggcggacaacctggcgcggatgcacctggggcactggcagcacgTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCAAt > 2:426312‑M2/68‑210 (MQ=255) gCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCAGGAAAAGTGCAGGCGGCGTa > 1:532924/1‑145 (MQ=255) ggACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCAATGACGCGGAATGGCg > 1:49929/1‑219 (MQ=255) ggCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGGAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGCAAAGt > 2:225585/1‑122 (MQ=255) gCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCAATGACGCGGAATGGCGGACGCTGCTCTACTTTTACAAGATGGCGTTTGGCa > 1:261891/1‑236 (MQ=255) ccTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTAGTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCAATGACGCGGAATGGCGGACgct < 1:625029/204‑1 (MQ=255) gggCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCAATGACGCGGAATGGCGGACGCTGCTCTACTTTTACAAGATGGCGTTTGGCAGCGCTg < 1:704345/235‑1 (MQ=255) acctggcgcggatgcacctggggcactggcagcacgTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCAATGACGCGGAATGGCGGACGCTGCTCTACTTTTACAAGATGGCGTTTGGCAGCGCTGt < 1:426313‑M2/199‑1 (MQ=255) aCTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCt > 2:524669/1‑172 (MQ=255) aCTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCAATGACGCGGAATGGCGGACGCTGCTCTACTTTTACAAGATGGCGTTTGGCAGCGCTGTCaaa > 1:713191/1‑236 (MQ=255) cTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCAATGACGCGGAATGGCGGACGCTGCTCTACTTTTACAAGATGGCGTTTGGCAGCGCTGTCAAAg < 1:507676/236‑1 (MQ=255) gcagcaCGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCAAt > 2:494689/1‑172 (MQ=255) cagcaCGACTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGACGAAGTGGAGCAGCTGGACCTGTAGAAGTGCAGGCGGCGTATCAGCTGc > 2:268943/1‑117 (MQ=255) ggCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCAATGAcgcg > 2:149371/1‑159 (MQ=255) cacgTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCAATGACGCGGAATGGCGGACGCTGCTCTACTTTTACAAGATGGCGTTTGGCAGCGCTGTCaaa > 1:599561‑M2/5‑207 (MQ=255) tATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCAATGACGCGGAATGGCGGACGCTGCTCTACTTTTACAAGATGGCGTTTGGCAGCGCTGTCAAAGGGTTAGAGTAATGAAACTAGAAATTGCTCGa < 2:370041/235‑1 (MQ=255) | GTGTACCGCGCATCGTCTTCTGTGGCGCGCAGCGCGATGCCGAGCACCAGTGGCGCGCGCTGCTGGTCAGCGAAGCGCTGGACGGTTTTGTCGAACTCGACACCTGGCATGCCGAAGGTGCCCGCGAGCGTTACCCGCAAGTGGTGCATGAGCGCATGCTCAAGGACCTGGCGGACAACCTGGCGCGGATGCACCTGGGGCACTGGCAGCACGGCTGCCTGTATGGCAAGCACGTATTCATCAAGGTAATTGGCGAAGGCGAGCAGGCCCGCGTCGAAGTGGCGCTGCTGGACCTGGAAAAGTGCAGGCGGCGTATCAGCTGCCAGCGGGCGGCCGGCAATGACTTGCGTCAGCTACGCCGCCATTCGTCGCTCAATGACGCGGAATGGCGGACGCTGCTCTACTTTTACAAGATGGCGTTTGGCAGCGCTGTCAAAGGGTTAGAGTAATGAAACTAGAAATTGCTCGA > AE015451/1044546‑1045014 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |