New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1074831 =	50 (1.250)	3 (0.080)	3/320	NT	7.4%	coding (25/1452 nt)	gatA	Glutamyl‑tRNA(Gln) amidotransferase subunit A
	?	AE015451	1075058 =	28 (0.740)					coding (122/309 nt)	gatC	Aspartyl/glutamyl‑tRNA(Asn/Gln) amidotransferase subunit C

TGTACCTGGTTCCCAAAGTCATCGAGTAAGGGATAGAGCCTGCCATGCATCAATTGACCCTGGCCGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1074899‑1074831 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgagaATGCTGTTCAGGGCGTCGGTAATGCGTGGCAGTTCGCCATCATTCAGGCCCAGGCGGGCCAGATGGGCGATCTTTTCCACGTCGCAGCGTTCAAGCGCCATGAGGATCTCCAAGGGAAACAAAGAACGGAATTTGGGTCCGCGGTGAGGAACATGTCAGCTTTCTGGCGGTCTAACGGCCGCGAAATTCTGCTGGCGTGCTCGGAAAAAC  >  AE015451/1075058‑1075267                                                                                                                                                                                                                                                                                         TGTACCTGGTTCCCAAAGTCATCGAGTAAGGGATAGAGCCTGCCATGCATCAATTGACCCTGGCCGAGAATGCTGTTCAGGGCGTCGGTAATGCGTGGCAGTTCGCCATCATTCAGGCCCAGGCGGGCCAGATGGGCGATCTTTTCCACGTCGCAGCGTTCAAGCGCCATGAGGATCTCCAAGGGAAACAAAGAACGGAATTTGGGTCCGC                                                                      >  1:686823/1‑211            CCCAAAGTCATCGAGTAAGGGATAGAGCCTGCCATGCATCAATTGACCCTGGCCGAGAATGCTGTTCAGGGCGTCGGTAATGCGTGGCAGTTCGCCATCATTCAGGCCCAGGCGGGCCAGATGGGCGATCTTTTCCCCGTCGCAGCGTTCAAGCGCCCTGAGGATCTCCAAGGGAAACAAc                                                                                         >  2:142015/1‑180                                      GCCTGCCATGCATCAATTGACCCTGGCCGAGAATGCTGTTCAGGGCGTCGGTAATGCGTGGCAGTTCGCCATCATTCAGGCCCAGGCGGGCCAGATGGGCGATCTTTTCCACGTCGCAGCGTTCAAGCGCCATGAGGATCTCCAAGGGAAACAAAGAACGGAATTTGGGTCCGCGGTGAGGAACATGTCAGCTTTCTGGCGGTCTAACGGCCGCGAAATTCTGCTGGCGTG             >  1:249085/1‑231                                                             TGGCCGAGAATGCTGTTCAGGGCGTCGGTAATGCGTGGCAGTTCGCCATCATTCAGGCCCAGGCGGGCCAGATGGGCGATCTTTTCCACGTCGCAGCGTTC                                                                                                                        <  2:494758/101‑1                                                              GGCCGAGAATGCTGTTCAGGGCGTCGGTAATGCGTGGCAGTTCGCCATCATTCAGGCCCAGGCGGGCCAGATGGGCGATCTTTTCCACGTCGCAGCGTTCAAGCGCCATGAGGATCTCCAAGGGAAACAAAGAACGGAATTTGGGTCCGCGGTGAGGAACATGTCAGCTTTCTGGCGGTCTAACGGCCGCGAAATTCTGCT                   >  1:379111/1‑201                                                                   AGAATGCTGTTCAGGGCGTCGGTAATGCGTGGCAGTTCGCCATCATTCAGGCCCAGGCGGGCCAGATGGGCGATCTTTTCCACGTCGCAGCGTTCAAGCGCCATGAGGATCTCCAAGGGAAACAAAGAACGGAATTTGGGTCCGCGGTGAGGAACATGTCAGCTTTCTGGCGGTCTAACGGCCGCGAAATTCTGCTGGCGTGCTCGGAAAAAC  <  2:122943/213‑1                                                                                                                                                                                                                                                                                         TGTACCTGGTTCCCAAAGTCATCGAGTAAGGGATAGAGCCTGCCATGCATCAATTGACCCTGGCCGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1074899‑1074831 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgagaATGCTGTTCAGGGCGTCGGTAATGCGTGGCAGTTCGCCATCATTCAGGCCCAGGCGGGCCAGATGGGCGATCTTTTCCACGTCGCAGCGTTCAAGCGCCATGAGGATCTCCAAGGGAAACAAAGAACGGAATTTGGGTCCGCGGTGAGGAACATGTCAGCTTTCTGGCGGTCTAACGGCCGCGAAATTCTGCTGGCGTGCTCGGAAAAAC  >  AE015451/1075058‑1075267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.