| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 1109670 = | 42 (1.050) | 3 (0.080) | 3/326 | NT | 7.2% | coding (336/651 nt) | PP_0969 | Transcriptional regulator, GntR family |
| ? | AE015451 | 1109701 = | 37 (0.950) | coding (367/651 nt) | PP_0969 | Transcriptional regulator, GntR family | |||||
TTGTGGGCGGCATCGACCAGCCGCTGGTGGAACACCAGGTCGCAGGCCACATAGGCATCGACATCGCCGTGAAAATGCCCGGCACTGCCTTCCAGGGCATCCCGTAGCGCTTGCAGGTCGGCATCGGTACGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/1109801‑1109670‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacggGATGCCCTGGAAGGCAGTGCCGGGCATTTTCACGGCGATGTCGATGCCTATGTGGCCTGCGACCTGGTGTTCCACCAGCGGCTGGTCGATGCCGCCCACAACCCGGCATTAAGCGAGCTGTACCGTTACTTTTCCGGGGTCGTGGCTGCCGCTCTGCAACACAATATGGCCACCGTTCCGCGCTGCCAGGCCACGTT > AE015451/1109701‑1109897 TTGTGGGCGGCATCGACCAGCCGCTGGTGGAACACCAGGTCGCAGGCCACATAGGCATCGACATCGCCGTGAAAATGCCCGGCACTGCCTTCCAGGGCATCCCGTAGCGCTTGCAGGTCGGCATCGGTACGGGATGCCCTGGAAGGCAGTGCCGGGCATTTTCACG > 1:590474/1‑166TTGTGGGCGGCATCGACCAGCCGCTGGTGGAACACCAGGTCGCAGGCCACATAGGCATCGACATCGCCGTGAAAATGCCCGGCACTGCCTTCCAGGGCATCCCGTAGCGCTTGCAGGTCGGCATCGGTACGGGATGCCCTGGAAGGCAGTGCCGGGCATTTTCACG < 2:590473/166‑1 GGCACTGCCTTCCAGGGCATCCCGTAGCGCTTGCAGGTCGGCATCGGTACGGGATGCCCTGGAAGGCAGTGCCGGGCATTTTCACGGCGATGTCGATGCCTATGTGGCCTGCGACCTGGTGTTCCACCAGCGGCTGGTCGATGCCGCCCACAACCCGGCATTAAGCGAGCTGTACCGTTACTTTTCCG > 2:726715/1‑188 GGGATGCCCTGGAAGGCAGGGCCGGGCATTTTCACGGCGATGTCGATGCCTATGTGGCCTGCGACCTGGTGTTCCACCAGCGGCTGGTCGATGCCGCCCACAACCCGGCATTAAGCGAGCTGTACCGTTACTTTTCCGGGGTCGTGGCTGCCGCTCTGCAACACAATATGGCCACCGTTCCGCGCTGCCAGGCCACGTT < 2:232738/199‑1 TTGTGGGCGGCATCGACCAGCCGCTGGTGGAACACCAGGTCGCAGGCCACATAGGCATCGACATCGCCGTGAAAATGCCCGGCACTGCCTTCCAGGGCATCCCGTAGCGCTTGCAGGTCGGCATCGGTACGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/1109801‑1109670‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacggGATGCCCTGGAAGGCAGTGCCGGGCATTTTCACGGCGATGTCGATGCCTATGTGGCCTGCGACCTGGTGTTCCACCAGCGGCTGGTCGATGCCGCCCACAACCCGGCATTAAGCGAGCTGTACCGTTACTTTTCCGGGGTCGTGGCTGCCGCTCTGCAACACAATATGGCCACCGTTCCGCGCTGCCAGGCCACGTT > AE015451/1109701‑1109897 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |