New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1135979	35 (0.880)	4 (0.110)	4/314	NT	10.7%	coding (996/1509 nt)	PP_0997	Sigma‑54 dependent transcriptional regulator/sensory box protein
	?	AE015451	= 1136013	34 (0.910)					coding (962/1509 nt)	PP_0997	Sigma‑54 dependent transcriptional regulator/sensory box protein

CGCGAAGCGGCGGTACCTCCAGGTTAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1135876‑1135979 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgggtggcgACCGTGAAGTGAAGGTGGATGTGCGCATCATCAGCGCCACCCACCGCGATCTGGAGCGCATGGTCGCCGAAGGCAGCTTTCGCGAAGACCTGTTCTACCGTCTGAACGTGCTTAACCTGGAGGTACCGCCGCTTCGCGACCGTGGCCAGGACATCCT  <  AE015451/1136013‑1135857                                                                                                                                                                                                                                                                       CGCGACGCGGCGGTACCTCCAGGTTAAGCACGTTCAGACGATCGAACAGGTCTTCGCGCAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTG                                                                                                                                                                      >  2:47279/1‑97                             CACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGACCGTGAAGTGAAGGTGGATGTGCGCATCATCAGCGCCACCCACCGCGATCTGGAGCGCATGGTCGCCGAAGGCAGCTTTCGCGAAGACCTGTTCTACCGTCTGAACGTGCTTAACCTGGAGGGACCGCCGCTTCGCGACCGTGGCCAGGACATCCT  >  1:204501/1‑233                                    AGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGACCGTGAAGTGAAGGTGGATGTGCGCATCATCAGCGCCACCCACCGCGATCTGGAGCGCATGGTCGCCGAAGGCAGCTTTCGCGAAGACCTGTTCTACCGTCTGAACGTGCTTAACCTGGAG                                     >  2:457820/1‑191                                         GTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGACCGTGAAGTGAAGGTGGATGTGCGCATCATCAGCGCCACCCACCGCGATCTGGAGCGCATGGGCGCCGACGGCAG                                                                                   >  2:72880/1‑140                                                                       GGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGACCGTGAAGTGAAGGTGGATGTGCGCATCATCAGCGCCACCCACCGCGATCTGGAGCGCATGGTCGCCGAAGGCAGCTTTCGCGAAGACCTGTTCTACCGTCT                                                        >  2:15712/1‑137                                                                                                                                                                                                                                                                       CGCGAAGCGGCGGTACCTCCAGGTTAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1135876‑1135979 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgggtggcgACCGTGAAGTGAAGGTGGATGTGCGCATCATCAGCGCCACCCACCGCGATCTGGAGCGCATGGTCGCCGAAGGCAGCTTTCGCGAAGACCTGTTCTACCGTCTGAACGTGCTTAACCTGGAGGTACCGCCGCTTCGCGACCGTGGCCAGGACATCCT  <  AE015451/1136013‑1135857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.