New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1135979	35 (0.880)	4 (0.110)	4/314	NT	10.7%	coding (996/1509 nt)	PP_0997	Sigma‑54 dependent transcriptional regulator/sensory box protein
	?	AE015451	= 1136013	34 (0.910)					coding (962/1509 nt)	PP_0997	Sigma‑54 dependent transcriptional regulator/sensory box protein

GGCCAAGGGTTGGCCAGCAGTGCCGAATGGGTGGAGGGGGTCAGCCGACAGGCTGGGCGCTGGATCTGCGTGCACGCCTGCTGCATGAAGAAGTGCGCCAGCATCAGGATGTCCTGGCCACGGTCGCGAAGCGGCGGTACCTCCAGGTTAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGAAAACGCAGCAGCTTGGCCTGCAGGTAGGGCGACATTTCACCAATTTCATCGAGGAACACGGTGCCCTGGTTGGCCAGTTCCATCAGCCCAGGCTTGCCACCGCGTTGCGCGCCGGTAAAGGCCCCGGGCGCGTAGCCGAACAGCTCGCT  >  AE015451/1135752‑1136197                                                                                                                                                                                                                                    |                                                                                                                                                                                                                           ggCCAAGGGTTGGCCAGCAGTGCCGAATGGGTGGAGGGGGTCAGCCGACAGGCTGGGCGCTGGATCTGCGTGCACGCCTGCTGCATGAAGAAGTGCGCCAGCATCAGGATGTCCTGGCCACGGTCGCGAAGCGGCGGTACCTCCAGGTTAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCtgatg                                                                                                                                                                                                                      <  2:616526/234‑1 (MQ=255)    cAAGGGTTGGCCAGCAGTGCCGAATGGGTGGAGGGGGTCAGCCGACAGGCTGGGCGCTGGATCTGCGTGCACGCCTGCTGCATGAAGAAGTGCGCCAGCATCAGGATGTCCTGGCCACGGTCGCGAAGCGGCGGTACCTCCAGGTTAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGatgatg                                                                                                                                                                                                                   <  2:387609/234‑1 (MQ=255)                                           aGCCGACAGGCTGGGCGCTGGATCTGCGTGCACGCCTGCTGCATGAAGAAGTGCGCCAGCATCAGGATGTCCTGGCCACGGTCGCGAAGCGGCGGTACCTCCAGGTTAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGAACATCCACcttcacttca                                                                                                                                                                                              >  2:641438/1‑216 (MQ=255)                                                       gggCGCTGGATCTGCGTGCACGCCTGCTGCATGAAGAAGTGCGCCAGCATCAGGATGTCCTGGCCACGGTCGCGAAGCGGCGGTACCTCCAGGTTAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCAt                                                                                                                                                               <  1:276031/235‑1 (MQ=255)                                                          cgcTGGATCTGCGTGCACGCCTGCTGCATGAAGAAGTGCGCCAGCATCAGGATGTCCTGGCCACGGTCGCGAAGCGGCGGTACCTCCAGGTTAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGc                                                                                                                                                            >  1:679634/1‑235 (MQ=255)                                                               gATCTGCGTGCACGCCTGCTGCATGAAGAAGTGCGCCAGCATCAGGATGTCCTGGCCACGGTCGCGAAGCGGCGGTACCTCCAGGTTAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCtg                                                                                                                                                                                                                         <  1:296356/169‑1 (MQ=255)                                                                ctCTGCGTGCACGCCTGCTGCATGAAGAAGTGCGCCAGCATCAGGATGTCCTGGCCACGGTCGCGAAGCGGCGGTACCTCCAGGTTAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACgg                                                                                                                                                                                           <  1:10781/197‑1 (MQ=255)                                                                   tGCGTGCACGCCTGCTGCATGAAGAAGTGCGCCAGCATCAGGATGTCCTGGCCACGGTCGCGAAGCGGCGGTACCTCCAGGTTAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGAAAAc                                                                                                                                                   <  1:95904/235‑1 (MQ=255)                                                                            gCCTGCTGCATGAAGAAGTGCGCCAGCATCAGGATGTCCTGGCCACGGTCGCGAAGCGGCGGTACCTCCAGGTTAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGAAAACGcagcag                                                                                                                                            >  2:702630/1‑233 (MQ=255)                                                                                                   cAGCATCAGGATGTCCTGGCCACGGTCGCGAAGCGGCGGTACCTCCAGGTTAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGAAAACGCAGCAGCTTGGCCTGCAGGTAGGGCGACAttt                                                                                                                  >  2:582926/1‑236 (MQ=255)                                                                                                          aGGATGTCCTGGCCACGGTCGCGAAGCGGCGGTCCCTCCAGGTTAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTcgccacccaccgcgatctggagcgcatggtcgccgaaggcagctttcgcgaagacctgttctaccgtctgaacgtg                                                                                                              >  1:204501‑M2/1‑157 (MQ=255)                                                                                                             aTGTCCTGGCCACGGTCGCGAAGCGGCGGTACCTCCAGGTTAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGAAAACGCAGCAGCTTGGCCTGCAGGTAGGGCGACATTTCACCAATTTc                                                                                                        <  1:582927/236‑1 (MQ=255)                                                                                                                   tGGCCACGGTCGCGAAGCGGCGGTACCTCCAGGTTAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACcttcact                                                                                                                                                                                                 <  2:211370/141‑1 (MQ=255)                                                                                                                    ggCCACGGTCGCGAAGCGGCGGTACCTCCAGGTTAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGCGaa                                                                                                                                                      >  1:99696/1‑183 (MQ=255)                                                                                                                      ccACGGTCGCGAAGCGGCGGTACCTCCAGGTTAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGAAAACGCAGCAGCTTGGCCTGCAGGTAGGGCGACATTTCACCAATTTCATCGAGGaa                                                                                               <  1:604911/236‑1 (MQ=255)                                                                                                                       cACGGTCGCGAAGCGGCGGTACCTCCAGGTTAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGAAAACGCAGCAGCTTGGCCTGCAGGTAGGGCGACATTTCACCAATTTCATCGAGGAac                                                                                              <  1:382498/236‑1 (MQ=255)                                                                                                                          tttCGCGAAGCGGCGGTACCTCCAGGTTAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAACGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGaa                                                                                                                                                      >  2:453586/3‑177 (MQ=255)                                                                                                                                    cggcggTACCTCCAGGTTAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGAAAACGCAGCAGCTTGGCCTGCAGGTAGGGCGACATTTCACCAATTTCATCGAGGAACACGGTGCCCTGGt                                                                                 <  1:333365/236‑1 (MQ=255)                                                                                                                                             cTCCAGGTTAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTcgccacccaccgcgatctggagcgcatggtcgccgaaggcagctttcgcgaagacctgttctaccgtct                                                                                                                     >  2:457820‑M2/1‑122 (MQ=255)                                                                                                                                                cAGGTTAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGAAAACGCAGCAGCTTGGCCTGCAGGTAGGGCGACATTTCACCAATTTCATCGAGGAACACGGTGCCCTGGt                                                                                 <  1:672386/224‑1 (MQ=255)                                                                                                                                                     tAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGAAAACGCAGCAGCTTGGCCTGCAGGTAGGGCGACATTTCACCAATTTCATCGAGGAACACGGTGCCCTGGTTGGCCAGTTCCATCa                                                                  >  2:452544/1‑234 (MQ=255)                                                                                                                                                         cACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGaccgtgaagtgaaggtggatgtgcgcatcatcagcgccacccaccgcgatctggagcgcatggtcgccgaaggcagctttcgcgaagacctgttctaccgtctgaacgtgcttaacctggagggaccgccgcttcgcgaccgtggccaggacatcct                                                               >  1:204501‑M1/1‑76 (MQ=255)                                                                                                                                                         cACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCCTCGCTGAGAAAACGCAGCAGCTCGGCCTGCAg                                                                                                                                >  2:190804/1‑168 (MQ=255)                                                                                                                                                                aGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGaccgtgaagtgaaggtggatgtgcgcatcatcagcgccacccaccgcgatctggagcgcatggtcgccgaaggcagctttcgcgaagacctgttctaccgtctgaacgtgcttaacctggag                                                                                                  >  2:457820‑M1/1‑69 (MQ=255)                                                                                                                                                                aGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTcgccacccaccgcgatctggagcgcatggtcgcc                                                                                                                                                        >  2:15712‑M2/1‑103 (MQ=255)                                                                                                                                                                aGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGAAAACGCAGCAGCTTGGCCTGCAGGTAGGGCGACATTTCACCAATTTCATCGAGGAACACGGTGCCCTGGTTGGCCAGTTCCATCAGCCCAGGCTTGc                                                      >  1:387264/1‑235 (MQ=255)                                                                                                                                                                aGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGAAAACGCAGCAGCTTGGCCTGCAGGTAGGGCGACATTTCACCAATTTCATCGAGGAACACGGTGCCCTGGGTGGCCAGTGCCATCCGCCCAGGCCTGc                                                      >  2:257099/1‑235 (MQ=255)                                                                                                                                                                     gTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGaccgtgaagtgaaggtggatgtgcgcatcatcagcgccacccaccgcgatctggagcgcatgggcgccgacggcag                                                                                                                                                >  2:72880‑M1/1‑64 (MQ=255)                                                                                                                                                                           cAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGAAAACGCAGCAGCTTGGCCTGCAGGTAGGGCGACATTTCACCAAtt                                                                                                          <  2:742021/172‑1 (MQ=255)                                                                                                                                                                            aGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACAGCAACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGGGACAACgca                                                                                                                                                >  2:238484/1‑133 (MQ=255)                                                                                                                                                                                 ttCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAGGCTGCCATCGCTGAGaaa                                                                                                                                                     >  2:282469/1‑123 (MQ=255)                                                                                                                                                                                 ttCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGAAAACGCAGCAGCTTGGCCTGCAGGTAGGGCgccc                                                                                                                     >  2:122987/1‑152 (MQ=255)                                                                                                                                                                                 ttCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGAAAACGCAGCAGCTTGGCCTGCAGGTAGGGCGACATTTCACCAATTTCATCGAGGAACACGGTGCCCTGGTTGGCCAGTTCCATCAGCCCAGGCTTGCCACCGCGTTGCGCGCCg                                     >  1:451917/1‑235 (MQ=255)                                                                                                                                                                                 ttCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGAAAACGCAGCAGCTTGGCCTGCAGGTAGGGCGACATTTCACCAATTGCATCGAGGAacac                                                                                            >  2:308306/1‑180 (MQ=255)                                                                                                                                                                                      gAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCCGAGAAAACGCAGCAGCTTGGCCTGCAGGTAGGGCGACATTTCACCAATTTCATCGAGGAACACGGTGCCCTGGTTGGCCAGTTCCATCAGCCCAGGCTTGCCACCGCGTTCCGCGCCGGTaa                                 >  1:360636/1‑234 (MQ=255)                                                                                                                                                                                          gCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCCCATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGAAAACGCAGCAGCTTGGCCTGCAGGTAGGGCGACATTTCACCAATTTCATCGAGGAACACGGTGccc                                                                                     <  2:112994/178‑1 (MQ=255)                                                                                                                                                                                           cTGCCGTCGGCGCCCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTcgccacccaccgcgatctggagcgcatggtcgccgaaggcagctttcgcgaagacctgttctac                                                                                                                          >  2:72880‑M2/1‑76 (MQ=255)                                                                                                                                                                                            tGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGAAAAc                                                                                                                                                   >  2:228317/1‑114 (MQ=255)                                                                                                                                                                                            tGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGAAAAc                                                                                                                                                   <  1:228317/114‑1 (MQ=255)                                                                                                                                                                                                ttCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCTCTGATGCTGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGAAAACGCAGCAGCTTGGCCTGCAGGTAGGGCGACATTTCACCAATTTCATCGAGGAACACGGTGCCCTGGTTGGCCAGtt                                                                        <  2:205628/185‑1 (MQ=255)                                                                                                                                                                                                   ggCGACCATGCGCTCCAGATCGCGGTGGGTGGCGaccgtgaagtgaaggtggatgtgcgcatcatcagcgccacccaccgcgatctggagcgcatggtcgccgaaggcagctttcgcgaagacctgttctaccgtct                                                                                                                     >  2:15712‑M1/1‑34 (MQ=255)                                                                                                                                                                                                   ggCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGAAAACGCAGCAGCTTGGCCTGCAGGTAGGGCGACATTTCACCAATTTCATCGAGGAACACGGTGCCCTGGTTGGCCAGTTCCATCAGCCCAGGCTTGCCACCGCGTTGCGCGCCGGTAAAGGCCCCGGGcgcg                   <  1:696975/235‑1 (MQ=255)                                                                                                                                                                                                    gCGACCATGCGCTCCAGAGCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGAAAACGCAGCAGCTTGGCCTGCAGGTAGGGCGACATTTCACCAATTTCATCGAGGAACACGGTGCCCTGGTTGGCCAGTTCCATCAGCCCAGGCTTGCCACCGCGTTGCGCGCCGGTAAAGGCCCCgg                        <  1:124890/229‑1 (MQ=255)                                                                                                                                                                                                                               gtggCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGAAAACGCAGCAGCTTGGCCTGCAGGTAGGGCGACATTTCACCAATTTCATCGAGGAACACGGTGCCCTGGTTGGCCAGTTCCATCAGCCCAGGCTTGCCACCGCGTTGCGCGCCGGTAAAGGCCCCGGGCGCGTCGCCGACCCGCCCGCt  >  2:197163/1‑224 (MQ=255)                                                                                                                                                                                                                                    |                                                                                                                                                                                                                           GGCCAAGGGTTGGCCAGCAGTGCCGAATGGGTGGAGGGGGTCAGCCGACAGGCTGGGCGCTGGATCTGCGTGCACGCCTGCTGCATGAAGAAGTGCGCCAGCATCAGGATGTCCTGGCCACGGTCGCGAAGCGGCGGTACCTCCAGGTTAAGCACGTTCAGACGGTAGAACAGGTCTTCGCGAAAGCTGCCTTCGGCGACCATGCGCTCCAGATCGCGGTGGGTGGCGCTGATGATGCGCACATCCACCTTCACTTCACGGTCGCCACCCACCCGGCGGAAGCTGCCATCGCTGAGAAAACGCAGCAGCTTGGCCTGCAGGTAGGGCGACATTTCACCAATTTCATCGAGGAACACGGTGCCCTGGTTGGCCAGTTCCATCAGCCCAGGCTTGCCACCGCGTTGCGCGCCGGTAAAGGCCCCGGGCGCGTAGCCGAACAGCTCGCT  >  AE015451/1135752‑1136197

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.