New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1308616 =	34 (0.850)	3 (0.080)	3/318	NT	8.3%	coding (136/888 nt)	PP_1143	3‑hydroxyisobutyrate dehydrogenase family protein
	?	AE015451	1308643 =	34 (0.900)					coding (163/888 nt)	PP_1143	3‑hydroxyisobutyrate dehydrogenase family protein

TACCGGTGCATCCAGCCAGGCCATGCCGCACAGTGCGGCCAGTTCGGCAGCCATTTCACGGGTGGCGGTGGGTTCCAGGCTGGAGAAATCGATCAGCAACTGGCCGCTGCGCCCGCCCTGGGCAATGCCTTGCTCGCCGAACACCACTTCACGCACCACCGCCGTGTCGGCCAGGCACAGTAGCACCATGTCGCTGTCACGGCACAATTCGGCCGGGCTGCTGGCCAGGCGCGCGCCAGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1308858‑1308616 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagcagcCCGGCCGAATTGTGCCGTGACAGCGACATGGTGC  >  AE015451/1308643‑1308676                                                                                                                                                                                                                                                                                       ccCCGGTGCATCCAGCCAGGCCATGCCGCACAGTGCGGCCAGTTCGGCAGCCATTTCACGGGTGGCGGTGGGTTCCAGGCTGGAGAAATCGATCAGCAACTGGCCGCTGCGCCCGCCCTGGGCAATGCCTTGCTCGCCGAACACCACTTCACGCACCACCGCCGTGTCGGCCAGGCACAGTAGCACCATGTCGCTGTCACGGCACAATTCGGCCGGGCTGCTGGCCAGGCGCGCGC                                           >  1:240901/3‑236                        TGCCGCACAGTGCGGCCAGTTCGGCAGCCATTTCACGGGTGGCGGTGGGTTCCAGGCTGGAGAAATCGATCAGCAACTGGCCGCTGCGCCCGCCCTGGGCAATGCCTTGCTCGCCGAACACCACTTCACGCACCACCGCCGTGTCGGCCAGGCACAGTAGCACCATGTCGCTGTCACGGCACAATTCGGCCGGGCTGCTGGCCAGGCGCGCGCCA                                         <  2:720949/215‑1                                 GTGCGGCCAGTTCGGCAGCCATTTCACGGGTGGCGGTGGGTTCCAGGCTGGAGAAATCGATCAGCAACTGGCCGCTGCGCCCGCCCTGGGCAATGCCTTGCTCGCCGAACACCACTTCACGCACCACCGCCGTGTCGGCCAGGCACAGTAGCACAATGTCGCTGTCACGGCACAATTCGGCCGGGCTGCTGGCCAGGCGCGCGCCAGC                                       >  1:38226/1‑208                                          GTTCGGCAGCCATTTCACGGGTGGCGGTGGGTTCCAGGCTGGAGAAATCGATCAGCAACTGGCCGCTGCGCCCGCCCTGGGCAATGCCTTGCTCGCCGAACACCACTTCACGCACCACCGCCGTGTCGGCCAGGCACAGTAGCACCATGTCGCTGTCACGGCACAATTCGGCCGGGCTGCTGGCCAGGCGCGCGCCAGCAGC                                    >  1:589132/1‑202                                          GTTCGGCAGCCATTTCACGGGTGGCGGTGGGTTCCAGGCTGGAGAAATCGATCAGCAACTGGCCGCTGCGCCCGCCCTGGGCAATGCCTTGCTCGCCGAACACCACTTCACGCACCACCGCCGTGTCGGCCAGGCACAGTAGCACCATGTCGCTGTCACGGCACAATTCGGCCGGGCTGCTGGCCAGGCGCGCGCCAGCAGC                                    <  2:589131/202‑1                                                            GGGTGGCGGTGGGTTCCAGGCTGGAGAAATCGATCAGCAACTGGCCGCTGCGCCCGCCCTGGGCAATGCCTTGCTCGCCGAACACCACTTCACGCACCACCGCCGTGTCGGCCAGGCACAGTAGCACCATGTCGCTGTCACGGCACAATTCGGCCGGGCTGCTGGCCAGGCGCGCGCCAGCAGCCCGGCCG                             <  2:430093/191‑1                                                                                                                          GCAATGCCTTGCTCGCCGAACACCACTCCACGCACCACCGCCGTGTCGGCCAGGCACAGCAGCACCATGTCGCTGTCACGGCACAATTCGGCCGGGCTGCTGGCCAGGCGCGCGCCAGCAGCCCGGCCGAATTGTGCCGTGACAGCGACATGGTG   <  1:578108/155‑1                                                                                                                                                                                    GTAGCACCATGTCGCTGTCACGGCACAATTCGGCCGGGCTGCTGGCCAGGCGCGCGCCAGCAGCCCGGCCGAATTGTGCCGTGACAGCGACATGGTGC  <  1:223327/98‑1                                                                                                                                                                                            ATGTCGCTGTCACGGCACAATTCGGCCGGGCTGCTGGCCAGGCGCGCGCCAGCAGC                                    >  1:396581/1‑56                                                                                                                                                                                            ATGTCGCTGTCACGGCACAATTCGGCCGGGCTGCTGGCCAGGCGCGCGCCAGCAGC                                    <  2:396580/56‑1                                                                                                                                                                                                                                                                                       TACCGGTGCATCCAGCCAGGCCATGCCGCACAGTGCGGCCAGTTCGGCAGCCATTTCACGGGTGGCGGTGGGTTCCAGGCTGGAGAAATCGATCAGCAACTGGCCGCTGCGCCCGCCCTGGGCAATGCCTTGCTCGCCGAACACCACTTCACGCACCACCGCCGTGTCGGCCAGGCACAGTAGCACCATGTCGCTGTCACGGCACAATTCGGCCGGGCTGCTGGCCAGGCGCGCGCCAGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1308858‑1308616 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagcagcCCGGCCGAATTGTGCCGTGACAGCGACATGGTGC  >  AE015451/1308643‑1308676

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.