New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 141141225 (0.630)5 (0.130) 5/318 NT 16.8% coding (523/1437 nt) PP_1232 conserved exported protein of unknown function
?AE015451 = 1411433 26 (0.690)coding (502/1437 nt) PP_1232 conserved exported protein of unknown function

GTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1411251‑1411412
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgccggcGATGCGGGCATCGGCATGATTGCCGGCACCCAGGCAGCGGCCATTCAGGAGCAACGGCGCTTCTCGCGCCAGAATGAACAGGAAGCCGACCGCATCGGTATCCAGAACCTGGAAAAAGCCGGCTACGATCCACGCAACATGCCGACCATGTTCGAGCGCCTGGCACGCCAGTATCGCTATGACGCCAAACCGCCGGAATTCC  <  AE015451/1411433‑1411232
                                                                                                                                                                                                                                                                                                                                                                            
GTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTCGCCGGCTTTTTCCAGGTTCTGGATACCGACGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGG                                                                                                                                                                                                             <  1:313515/161‑1
                                           ATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCG                                                                                                                                                                                                           >  1:568615/1‑120
                                           ATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCG                                                                                                                                                                                                           <  2:568614/120‑1
                                                                                                GGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCGATGCGGGCATCGGCATGATTGCC                                                                                                                                                                                    >  1:243845/1‑90
                                                                                                GGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCGATGCGGGCATCGGCATGATTGCC                                                                                                                                                                                    <  2:243845/90‑1
                                                                                                                                   GCTCCTGAATGGCCGCTGCCTGGGTGCCGGCGATGCGGGCATCGGCATGATTGCCGGCACCCAGGCAGCGGCCATTCAGGAGCAACGGCGCTTCTCGCGCCAGAATGAACAGGAAGCCGACCGCATCGGTATCCAGAACCTGGAAAAAGCCGGCTACGATCCACGCAACATGCCGACCATGTTCGAGCGCCTGGCACGCCAGTATCGCTATGACGCCAAACCGCCGGA       >  2:693826/1‑228
                                                                                                                                           ATGGCCGCTGCCTGGGTGCCGGCGATGCGTGCATCGGCATGATTGCCGGCACCCAGGCAGCGGCCATTCAGGAGCAACGGCGCTTCTCGCGCCAGAATGAACAGGAAGCCGACCGCATCGGTATCCAGAACCTGGAAAAAGCCGGCTACGATCCACGCAACATGCCGACCATGTTCGAGCGCCTGGCACGCCCGTATCGC                           >  1:132922/1‑200
                                                                                                                                                  CTGCCTGGGTGCCGGCGATGCGGGCATCGGCATGATTGCCGGCACCCAGGCAGCGGCCATTCAGGAGCAACGGCGCTTCTCGCGCCAGAATGAACAGGAAGCCGACCGCATCGGTATCCAGAACCTGGAAAAAGCCGGCTACGATCCACGCAACATGCCGACCATGTTCGAGCGCCTGGCACGCCAGTATCGCTATGACGCCAAACCGCCGGAATTCC  >  1:507268/1‑218
                                                                                                                                                                                                                                                                                                                                                                            
GTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1411251‑1411412
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgccggcGATGCGGGCATCGGCATGATTGCCGGCACCCAGGCAGCGGCCATTCAGGAGCAACGGCGCTTCTCGCGCCAGAATGAACAGGAAGCCGACCGCATCGGTATCCAGAACCTGGAAAAAGCCGGCTACGATCCACGCAACATGCCGACCATGTTCGAGCGCCTGGCACGCCAGTATCGCTATGACGCCAAACCGCCGGAATTCC  <  AE015451/1411433‑1411232

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.