New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1411412	25 (0.630)	5 (0.130)	5/318	NT	16.8%	coding (523/1437 nt)	PP_1232	conserved exported protein of unknown function
	?	AE015451	= 1411433	26 (0.690)					coding (502/1437 nt)	PP_1232	conserved exported protein of unknown function

CCGGGTGGGTCAGCAGGAATTCCGGCGGTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCCGCGCGAAGTGGCGTTGCGACAAGTGCGCCAGTTCGTGGGCCAGTACCGAGGCATATTCGCCCTCGGTCTGGGCGTTGAGGAACAGCCCACCGTTGACCCCGACAATGCCACCCGGGGCGGCAA  >  AE015451/1411217‑1411642                                                                                                                                                                                                                         |                                                                                                                                                                                                                  ccGGGTGGGTCAGCAGGAATTCCGGCGGTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGGAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCGGc                                                                                                                                                                                                    >  1:79712/1‑232 (MQ=255)  cGGGTGGGTCAGCAGGAATTCCGGCGGTTGGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCa                                                                                                                                                                                               <  1:473914/236‑1 (MQ=255)             gcagGAATTCCGGCGGTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCg                                                                                                                                                                                    >  1:255059/1‑236 (MQ=255)                ggAATTCCGGCGGTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCgccggcacccaggcag                                                                                                                                                                                                   >  1:507268‑M2/1‑202 (MQ=255)                     tCCGGCGGTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCgccggcacccaggcagcggccattcaggagc                                                                                                                                                                                    >  2:693826‑M2/1‑197 (MQ=255)                           ggTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCCGCAgcgc                                                                                                                                                                         >  2:499693/1‑233 (MQ=255)                                         gCGATACGGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCACGCATCgccggcacccaggcagcggccat                                                                                                                                                                                            >  1:132922‑M2/1‑177 (MQ=255)                                               cTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATg                                                                                                                                                   <  1:378561/235‑1 (MQ=255)                                                tGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATTCCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTTCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGcacca                                                                                                                                                                                                         <  2:710534/180‑1 (MQ=255)                                                  gCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTACCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATgag                                                                                                                                                 <  2:468367/234‑3 (MQ=255)                                                       ccAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGcgccgc                                                                                                                                                                      >  1:103050/1‑208 (MQ=255)                                                                                        gATCGTAGCCGGCTTTTTCCAGGTGCTGGATACCGAGGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCa                                                                                                                                                                                            <  2:27433/153‑1 (MQ=255)                                                                                            gTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAgcgc                                                                                                                                                                         >  2:555020/1‑168 (MQ=255)                                                                                                                              cGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGACTGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCAt                                                                                                                                                    <  2:93606/155‑1 (MQ=255)                                                                                                                               ggTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACg                                                                                                                                                                                          <  1:553850/116‑1 (MQ=255)                                                                                                                               ggTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACg                                                                                                                                                                                          >  2:553849/1‑116 (MQ=255)                                                                                                                                      ttCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCCGCGCCGCCATCATCGGCAACTGCAt                                                                                                                                                    >  2:55031/1‑147 (MQ=255)                                                                                                                                      ttCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCCGCGCGaa                                                                                                                      <  1:744522/177‑1 (MQ=255)                                                                                                                                                 tCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTACGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCcgcggg                                                                                                                        >  2:412276/1‑162 (MQ=255)                                                                                                                                                   cggCGCGAGAAGCGCCGTTGCTCCTGAAGGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGc                                                                                                                                                                                  <  2:103050/103‑1 (MQ=255)                                                                                                                                                                         ccTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACAcccc                                                                                                                             <  2:4809/135‑1 (MQ=255)                                                                                                                                                                            gAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCCGCGCGAAGTGGCGTTGCGACAAGTGCGCCAGTTCGTGGGCCAGTACCGAGGCATATTCGCCCTCGGTCTGGGCGTTGAGGAACAGCCCACCGtt                               <  1:702046/226‑1 (MQ=255)                                                                                                                                                                                     cTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCCGCGCGAAGTGGCGTTGCGACAAGTGCGCCAGTTCGTGGGCCAGTACCGAGGCATATTCGc                                                                 <  1:669268/183‑1 (MQ=255)                                                                                                                                                                                     cTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCCGCGCGAAGTGGCGTTGCGACAAGTGCGCCAGTTCGTGGGCCAGTACCGAGGCATATTCGc                                                                 >  2:669267/1‑183 (MQ=255)                                                                                                                                                                                           tggTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCCGCGCGAAGTGGCGTTGCGACAAGTGCGCCAGTTCGTGGGCCAGTACCGAGGCATATTCGCCCTCGGTCTGGGCGTTGAGGAACAGCCCACCGTTGACCCCGACAATGCCACCCgg          >  1:537747/2‑232 (MQ=255)                                                                                                                                                                                                  ggCAATCATGCCGATGCCCGCATCgccggcacccaggcagcggccattcaggagcaacggcgcttctcgcgccagaatgaacaggaagcc                                                                                                                                                 <  2:243845‑M2/90‑67 (MQ=255)                                                                                                                                                                                                  ggCAATCATGCCGATGCCCGCATCgccggcacccaggcagcggccattcaggagcaacggcgcttctcgcgccagaatgaacaggaagcc                                                                                                                                                 >  1:243845‑M2/1‑24 (MQ=255)                                                                                                                                                                                                     aaTCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCCGCGCGAAGTGGCGTTGCGACAAGTGCGCCAGTTCGTGGGCCAGTACCGAGGCATATTCGCCCTCGGTCTGGGCGTTGAGGAACAGCCCAcc                                  <  2:629147/198‑1 (MQ=255)                                                                                                                                                                                                     aaTCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCCGCGCGAAGTGGCGTTGCGACAAGTGCGCCAGTTCGTGGGCCAGTACCGAGGCATATTCGCCCTCGGTCTGGGCGTTGAGGAACAGCCCACCGTTGACCCCGACAATGCCACCCg           >  2:422750/1‑221 (MQ=255)                                                                                                                                                                                                     aaTCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCCGCGCGAAGTGGCGTTGCGACAAGTGCGCCAGTTCGTGGGCCAGTACCGAGGCATATTCGCCCTCGGTCTGGGCGTTGAGGAACAGCCCACCGTTGACCCCGACAATGCCACCCg           <  1:422751/221‑1 (MQ=255)                                                                                                                                                                                                           gCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCCGCGCGAAGTGGCGTTGCGACAAGTGCGCCAGTTCGTGGGCCAGTACCGAGGCATATTCGCCCTCg                                                            >  1:69948/1‑166 (MQ=255)                                                                                                                                                                                                           gCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCCGCGCGAAGTGGCGTTGCGACAAGTGCGCCAGTTCGTGGGCCAGTACCGAGGCATATTCGCCCTCGGTCTGGGCGTTGAGGAACAGCCCACCGTTGACCCCGACAATGCCACCCGGGGCGGCag  >  1:92380/1‑223 (MQ=255)                                                                                                                                                                                                                      cATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCCGCGCGAAGTGGCGTTGCGACAAGTGCGCCAGTTCGTGGGCCAGTACCGAGGCATATTCGCCCTCGGTCTGGGCGTTGAGGAACAGCCCACCGTTGACCCCGACAATGCCACCCGGggcg      <  2:409765/209‑1 (MQ=255)                                                                                                                                                                                                                         cgccggcacccaggcagcggccattcaggagcaacggcgcttctcgcgccagaatgaacaggaagccgaccgcatcggtatccagaacctggaaaaagccggctacgatccacgcaacat                                                                                            >  1:568615‑M2/1‑1 (MQ=255)                                                                                                                                                                                                                         cgccggcacccaggcagcggccattcaggagcaacggcgcttctcgcgccagaatgaacaggaagccgaccgcatcggtatccagaacctggaaaaagccggctacgatccacgcaacat                                                                                            <  2:568614‑M2/120‑120 (MQ=255)                                                                                                                                                                                                                         |                                                                                                                                                                                                                  CCGGGTGGGTCAGCAGGAATTCCGGCGGTTTGGCGTCATAGCGATACTGGCGTGCCAGGCGCTCGAACATGGTCGGCATGTTGCGTGGATCGTAGCCGGCTTTTTCCAGGTTCTGGATACCGATGCGGTCGGCTTCCTGTTCATTCTGGCGCGAGAAGCGCCGTTGCTCCTGAATGGCCGCTGCCTGGGTGCCGGCAATCATGCCGATGCCCGCATCGCCGGCACCACCTGCGGCCAGCACGATGCCGGCCAGCAGCGCCGCCATCATCGGCAACTGCATGCGCTGCTGGGCCTCGACACCCCGCGCGAAGTGGCGTTGCGACAAGTGCGCCAGTTCGTGGGCCAGTACCGAGGCATATTCGCCCTCGGTCTGGGCGTTGAGGAACAGCCCACCGTTGACCCCGACAATGCCACCCGGGGCGGCAA  >  AE015451/1411217‑1411642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.