New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1899908	31 (0.780)	4 (0.110)	4/314	NT	14.3%	coding (459/4026 nt)	PP_1703	assimilatory nitrate reductase/sulfite reductase
	?	AE015451	= 1899959	19 (0.510)					coding (510/4026 nt)	PP_1703	assimilatory nitrate reductase/sulfite reductase

CACCAGCATGGACCAGGCCATCGCTGCCACCGCCGAGCGTCTGCGCGGCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCAGCGCCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1899677‑1899908 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggcgccgatCACCAGAAATACGTCGGCGTGCTCGAAGTCCTGGTAACTGCCAGGTGGGCCATCGGCGCCAAGCGACAGCTTGTAGCCACTGCTGGCGCTGGCCATGCACAGGCGCGAGTTGGACTCGATGTGGCGCGTACGGATAAAGCCCTTGGCCAACTTGTTGGCCAGGTACTGGGCCTCCAGCGACATTTGCCCGGACACGTACAGCGC  <  AE015451/1899959‑1899756                                                                                                                                                                                                                                                                                                                                                                                                                                                      CACCAGCATGGACCAGGCCATCGCTGCCACCGCCGAGCGTCTGCGCGGCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCAGCGCCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGATCAC                                                                                                                                                                                                           >  1:534010/1‑235                                                GCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCAGCGCCATCAGTGGCTACAAGCTGTCGCTTGGCGCCGATCACCAGAAATACGTCGGCGTGCTCGAAGTCCTGGTAACTGCCAGGTGGGC                                                                                                                                                            <  1:602125/235‑1                                                     ATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCAGCGCCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGATCACCAGAAATACGTCGGCGTGCTCGAAGTCCTGGTAACTGCCAGGTGGGCCATC                                                                                                                                                        <  2:534009/234‑1                                                                                                      TGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCAGCGCCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGATCACCAGAAATACGTC                                                                                                                                                                                               <  2:92654/146‑1                                                                                                                              CCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCAGCGCCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGAT                                                                                                                                                                                                              <  1:409717/107‑1                                                                                                                              CCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCAGCGCCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGAT                                                                                                                                                                                                              >  2:409716/1‑107                                                                                                                                                                                                             TGGCTACAAGCTGTCGCTTGGCGCCGATCACCAGAAATACGTCGGCGTGCTCGAAGTCCTGGTAACTGCCAGGTGGGCCATCGGCGCCAAGCGACAGCTTGTAGCCACTGCTGGCGCTGGCCATGCACAGGCGCGAGTTGGACTCGATGTGGCGCGTACGGATAAAGCCCTTGGCCAACTTGTTGGCCAGGTACTGGGCCTCCAGCGACATTTGCCCGGACACGTACAGCGC  >  1:279100/1‑232                                                                                                                                                                                                                            GCTTGGCGCCGATCACCAGAAATACGTCGGCGTGCTCGAAGTCCTGGTAACTGCCAGGTGGGCCATCGGCGCCAAGCGACAGCTTGTAGCCACTGCTGGCGCTGGCCATGCACAGGCGCGAGTTGGACTCGATGTGGCGCGTACGGATAAAGCCCTTGGCCAACTTGTTGGCCAGGTACTGGGCCTCCAGCGACCTTTGCCCGGCCACGTAC       >  2:732436/1‑212                                                                                                                                                                                                                                                                                                                                                                                                                                                      CACCAGCATGGACCAGGCCATCGCTGCCACCGCCGAGCGTCTGCGCGGCATCATCGACCAGCACGGCCCGGATGCCGTGGCGCTGTACGTGTCCGGGCAAATGTCGCTGGAGGCCCAGTACCTGGCCAACAAGTTGGCCAAGGGCTTTATCCGTACGCGCCACATCGAGTCCAACTCGCGCCTGTGCATGGCCAGCGCCAGCAGTGGCTACAAGCTGTCGCTTGGCGCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1899677‑1899908 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggcgccgatCACCAGAAATACGTCGGCGTGCTCGAAGTCCTGGTAACTGCCAGGTGGGCCATCGGCGCCAAGCGACAGCTTGTAGCCACTGCTGGCGCTGGCCATGCACAGGCGCGAGTTGGACTCGATGTGGCGCGTACGGATAAAGCCCTTGGCCAACTTGTTGGCCAGGTACTGGGCCTCCAGCGACATTTGCCCGGACACGTACAGCGC  <  AE015451/1899959‑1899756

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.