New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1957618	46 (1.150)	3 (0.080)	3/316	NT	6.0%	intergenic (+46/+51)	PP_1754/fumC‑II	conserved protein of unknown function/fumarate hydratase (class 2)
	?	AE015451	= 1957649	50 (1.330)					intergenic (+77/+20)	PP_1754/fumC‑II	conserved protein of unknown function/fumarate hydratase (class 2)

CCAGTTGAGTGCTCAATGGACATTTGAAATTGGTTATACCCACTATGCGGTCCGTTTGGGGCACTCTTTGCCGGAAACTCGCGCATTTGTGCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1957389‑1957618 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagccgcccAGGTTGCCTCATCACCTCGGCACCGCACCACGGGCGGCTCACAGTTTATCGGGTAGAGGTGCCTATCGCTCTGGCACTCAAGAAATCGGGTCATCCCCGGTACGAGGATAAGCATGGGTCAGACTTTCCCACATGTAATGAAAATCGCCTTGCGTCGGCCGATGTCTTTGCACAAATGCGCGAGTTTCCGGCAAAGAGTGCCCCAAACGGACCGCATAGTGGGTATAACC  <  AE015451/1957649‑1957420                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CCAGTTGAGTGCTCAATGGACATTTG‑AATTGGTTATACCCACTATGCGGTCCGTTTGGGGCACTCTTTGCCGGAAACTCGCGCATTTGTGCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGTGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTG                                                                                                                                                                                                                                                <  2:593933/221‑1                                                                                                                                                CCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCAGGTTGCCTCATCACCTCGGCACCGCACCACGGGCG                                                                                                                                                                                                    >  1:344513/1‑123                                                                                                                                                CCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCAGGTTGCCTCATCACCTCGGCACCGCACCACGGGCG                                                                                                                                                                                                    <  2:344512/123‑1                                                                                                                                                                 ACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCAGGTTGCCTCATCAACGTGGCACTGCACAACGGGCGGCT                                                                                                                                                                                                 >  1:220728/1‑109                                                                                                                                                                                                                                GCCGCCCAGGTTGCCTCATCACCTCGGCACCGCACCACGGGCGGCTCACAGTTTATCGGGTAGAGGTGCCTATCGCTCTGGCACTCAAGAAATCGGGTCCTCCCCGGTACGAAGATAAGCATGGGTCAGACTTTCCCACATGTAATGAAAca                                                                                       >  2:690238/1‑150                                                                                                                                                                                                                                  CGCCCAGGTTGCCTCATCACCTCGGCACCGCACCACGGGCGGCTCACAGTTTATCGGGTAGAGGTGCCTATCGCTCTGGCACTCAAGAAATCGGGTCATCCCCGGTACGAGGATAAGCATGGGTCAGACTTTCCCACATGTAATGAAAATCGCCTTGCGTCGGCCGATGTCTTTGCACAAATGCGCGAGTTTCCGGCAAAGAGTGCCCCAAACGGACCGCATAGTGGGTATAACC  <  1:689452/235‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CCAGTTGAGTGCTCAATGGACATTTGAAATTGGTTATACCCACTATGCGGTCCGTTTGGGGCACTCTTTGCCGGAAACTCGCGCATTTGTGCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1957389‑1957618 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagccgcccAGGTTGCCTCATCACCTCGGCACCGCACCACGGGCGGCTCACAGTTTATCGGGTAGAGGTGCCTATCGCTCTGGCACTCAAGAAATCGGGTCATCCCCGGTACGAGGATAAGCATGGGTCAGACTTTCCCACATGTAATGAAAATCGCCTTGCGTCGGCCGATGTCTTTGCACAAATGCGCGAGTTTCCGGCAAAGAGTGCCCCAAACGGACCGCATAGTGGGTATAACC  <  AE015451/1957649‑1957420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.