New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 1957618	46 (1.150)	3 (0.080)	3/316	NT	6.0%	intergenic (+46/+51)	PP_1754/fumC‑II	conserved protein of unknown function/fumarate hydratase (class 2)
	?	AE015451	= 1957649	50 (1.330)					intergenic (+77/+20)	PP_1754/fumC‑II	conserved protein of unknown function/fumarate hydratase (class 2)

TCCAGTTGAGTGCTCAATGGACATTTGAAATTGGTTATACCCACTATGCGGTCCGTTTGGGGCACTCTTTGCCGGAAACTCGCGCATTTGTGCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATGCCGCCTCGCGCAAGGTCGTGCCCTCGCTGTAAGCCTTCTTGGCAATTTCTGCCGCCTTGTCATAGCCAATATGCGGGTTCAGCGCCGTCACCAG  >  AE015451/1957388‑1957848                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                       tCCAGTTGAGTGCTCAATGGACATTTGAAATTGGTTATACCCACTATGCGGTCCGTTTGGGGCACTCTTTGCCGGAAACTCGCGCATTTGTGCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCgtgg                                                                                                                                                                                                                                    >  1:528705/1‑235 (MQ=255)            gCTCAATGGACATTTGAAATTGGTTATACCCACTATGCGGTCCGTTTGGGGCACTCTTTGCCGGAAACTCGCGCATTTGTCCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGATCCGCCCgg                                                                                                                                                                                                                                      >  1:189934/1‑221 (MQ=255)                   ggACATTTGAAATTGGTTATACCCACTATGCGGTCCGTTTGGGGCACTCTTTGCCGGAAACTCGCGCATTTGTGCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGtga                                                                                                                                                                                                                    >  2:725889/1‑233 (MQ=255)                                 ggTTATACCCACTATGCGGTCCGTTTGGGGCACTCTTTGCCGGAAACTCGCGCATTTGTGCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTgggcg                                                                                                                                                                                                    <  1:689452‑M2/235‑6 (MQ=255)                                   ttATACCCCCTATGCGGTCCGGTTGGGGCTCTCTTTGCCGGAAACTCGCGCATTTGTGCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAgg                                                                                                                                                                                                                       <  2:162761/214‑1 (MQ=255)                                                gCGGTCCGTTTGGGGCACTCTTTGCCGGAAACTCGCGCATTTGTGCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATggggg                                                                                                                                                                                         >  2:707299/1‑231 (MQ=255)                                                       gTTTGGGGCACTCTTTGCCGGAAACTCGCGCATTTGTGCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCtt                                                                                                                                                                              >  1:388783/1‑235 (MQ=255)                                                       gTTTGGGGCACTCTTTGCCGGAAACTCGCGCATTTGTGCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGACAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAgg                                                                                                                                                                                                                       >  1:692477/1‑194 (MQ=255)                                                          tGGGGCACTCTTTGCCGGAAACTCGCGCATTTGTGCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATgggg                                                                                                                                                                                          >  1:209764/1‑220 (MQ=255)                                                            gggCACTCTTTGCCGGAAACTCGCGCATTTGTGCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATCAACTGTGAGCCGCCCgtgg                                                                                                                                                                                                                                    >  2:3684/1‑176 (MQ=255)                                                             ggCACTGTTTGCCGGAAACTCGCGAATTTGTGCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGccc                                                                                                                                                                         <  2:633411/234‑1 (MQ=255)                                                                 ctctTTGCCGGAAACTCGCGCATTTGTGCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGgc                                                                                                                                                                   >  1:537386/1‑236 (MQ=255)                                                                               cTCGCGCATTTGTGCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGc                                                                                                                                                                           <  1:737648/214‑1 (MQ=255)                                                                               cTCGCGCATTTGTGCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGc                                                                                                                                                                           >  2:737647/1‑214 (MQ=255)                                                                                  gcgcATTTGTGCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTggtgcggt                                                                                                                                                                                                                              <  2:198254/160‑1 (MQ=255)                                                                                        ttGTGCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTtct                                                                                                                                                      <  2:739311/226‑1 (MQ=255)                                                                                             cAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGag                                                                                                                                                                                       >  2:72035/1‑187 (MQ=255)                                                                                                    aTCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCACCCACTGGTCGa                                                                                                                                 <  1:295425/235‑1 (MQ=255)                                                                                                     tCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGa                                                                                                                                                                                        <  1:419437/179‑1 (MQ=255)                                                                                                     tCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGa                                                                                                                                                                                        >  2:419436/1‑179 (MQ=255)                                                                                                     tCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCAcc                                                                                                                                           <  1:432675/224‑1 (MQ=255)                                                                                                     tCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCAcc                                                                                                                                           >  2:432674/1‑224 (MQ=255)                                                                                                     tCGGCAGACGCAAGGCGATTTGCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGcc                                                                                                                                                                                <  2:184707/187‑1 (MQ=255)                                                                                                            aCGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCACCCACTGGTCGAACTGTTCAt                                                                                                                        <  1:630764/236‑1 (MQ=255)                                                                                                             cGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCACCCACTGGTCGAACTGTTCAtt                                                                                                                       <  1:725890/236‑1 (MQ=255)                                                                                                               cAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTggtgcg                                                                                                                                                                                                                                >  2:235826/1‑129 (MQ=255)                                                                                                               cAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTggtgcg                                                                                                                                                                                                                                <  1:235826/129‑1 (MQ=255)                                                                                                               cAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATggggg                                                                                                                                                                                         >  1:701430/1‑168 (MQ=255)                                                                                                               cAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCACCCACTGGTCGAACTGTTCagt                                                                                                                       >  2:524789/1‑232 (MQ=255)                                                                                                                 aGGCGATTTTCATTACATGTGGTAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCACCCACTGGTCGAACTGTTCATTGGTc                                                                                                                   <  1:406191/236‑1 (MQ=255)                                                                                                                      tgtttcaTTACATGTGGGAAAGTCTGACCCATGCTTATCTTCGTACCGGGGAGGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTgggcggc                                                                                                                                                                                                  >  2:690238‑M2/3‑145 (MQ=255)                                                                                                                          tCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGCGGCaa                                                                                                                                                                                                            >  2:745496/1‑138 (MQ=255)                                                                                                                                cATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCACCCACTGGTCGAACTGTTCATTg                                                                                                                      >  2:487865/1‑218 (MQ=255)                                                                                                                                      ggAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATgcc                                                                                              <  1:61305/236‑1 (MQ=255)                                                                                                                                                 cccATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCaggttgcctcatcacctcggcaccgcaccacgggcg                                                                                                                                                                                                    >  1:344513‑M1/1‑87 (MQ=255)                                                                                                                                                 cccATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCaggttgcctcatcacctcggcaccgcaccacgggcg                                                                                                                                                                                                    <  2:344512‑M1/123‑37 (MQ=255)                                                                                                                                                             cTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGCGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCAGGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTtctc                                                                                                                                                     >  2:246598/1‑158 (MQ=255)                                                                                                                                                                 tACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTCGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCACCCAc                                                                                                                                        <  1:408605/167‑1 (MQ=255)                                                                                                                                                                  aCCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCaggttgcctcatcaacgtggcactgcacaacgggcggct                                                                                                                                                                                                 >  1:220728‑M1/1‑70 (MQ=255)                                                                                                                                                                  aCCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATGCCGCCTCGCGCAAGGTCGTGCCCTCGCTGt                                                                  >  1:499147/1‑236 (MQ=255)                                                                                                                                                                    cGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATGCCGCCTCGCGCAAGGCCGTGCCCTCGCt                                                                    >  1:250845/1‑232 (MQ=255)                                                                                                                                                                               cGATTTCTTGAGTGCCAGAGCGATAGGCAGCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTGATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTcc                                                                                                                                                    >  2:567694/1‑141 (MQ=255)                                                                                                                                                                                    tCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATGCCGCCTCGCGCAAGGTCGTGCCCt                                                                        >  2:596191/1‑212 (MQ=255)                                                                                                                                                                                        gAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATGCCGCCTCGCGCAAGGTCGTGCCCTCGCTGTAAGCCTTCTTGGCAAt                                                  >  2:640995/1‑230 (MQ=255)                                                                                                                                                                                         cgTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATGCCGCCTCGCGCAAGGTCGTGCCCTCGCTGTAAGCCTTCTTGGCAATTTCTgcc                                           <  2:528704/235‑1 (MQ=255)                                                                                                                                                                                         aGTGGCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATGCCGCCTCGCGCAAGGTCGTGCCCTCGCTGTAAGCCTTCTTGGCAATTTCTgcc                                           <  1:247439/236‑1 (MQ=255)                                                                                                                                                                                           tGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATgcc                                                                                              <  2:288732/183‑1 (MQ=255)                                                                                                                                                                                                                 aCCCGATAAACGGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATGCCGCCTCGCGCAAGGTCGTGCCCTCGCTGTAAGCCTTCTTGGCAAttt                                                <  1:24855/207‑1 (MQ=255)                                                                                                                                                                                                                  cccGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATgcc                                                                                              >  2:339591/1‑160 (MQ=255)                                                                                                                                                                                                                  cccGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATgcc                                                                                              <  1:339592/160‑1 (MQ=255)                                                                                                                                                                                                                         aaCTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATGCCGCCTCGCGCAAGGTCGTGCCCTCGCTGTAAGCCTTCTTGGCAATTTCTGCCGCCTTGTCATAGCCAATATGCGGGTTCAgc             <  1:487866/234‑1 (MQ=255)                                                                                                                                                                                                                            tgtgAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCAGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCa                                                                                                                                             <  2:263582/103‑1 (MQ=255)                                                                                                                                                                                                                                aGCCGCCCGTTGTGCAGTGCCACGTTGATGAGGCAACCTgggcggctcacagtttatcgggtagaggtgcctatcgctctggcactcaagaaatcgggtcatccccggt                                                                                                                                   >  1:220728‑M2/1‑39 (MQ=255)                                                                                                                                                                                                                                 gccgccCaggttgcctcatcacctcggcaccgcaccacgggcggctcacagtttatcgggtagaggtgcctatcgctctggcactcaagaaatcgggtcctccccggtacgaagataagcatgggtcagactttcccacatgtaatgaaaca                                                                                       >  2:690238‑M1/1‑7 (MQ=255)                                                                                                                                                                                                                                 gccgccCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATGCCGCCTCGCGCAAGGTCGTGCCCTCGCTGTAAGCCTTCTTGGCCATTTCTGCCGCCTTGTCATAGCCAATATGCGGGTTCAGCCCCGTCAcc    >  1:296678/1‑235 (MQ=255)                                                                                                                                                                                                                                 gccgccCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATGCCGCCTCGCGCAAGGTCGTGCCCTCGCTGTAAGCCTTCTTGGCAATTTCTGCCGCCTTGTCATAGCCAATATGCGGGTTCAGCGCCGt        <  2:499146/231‑1 (MQ=255)                                                                                                                                                                                                                                   cgccCaggttgcctcatcacctcggcaccgcaccacgggcggctcacagtttatcgggtagaggtgcctatcgctctggcactcaagaaatcgggtcatccccggtacgaggataagcatgggtcagactttcccacatgtaatgaaaatcgccttgcgtcggccgatgtctttgcacaaatgcgcgagtttccggcaaagagtgccccaaacggaccgcatagtgggtataacc  <  1:689452‑M1/235‑231 (MQ=255)                                                                                                                                                                                                                                   cgccCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTgggcggctcacagtttatcgggtagaggtgcctatcgctctggcactcaagaaatcgggtcatccccggtacgaggataagcatggg                                                                                                                  <  2:344512‑M2/123‑88 (MQ=255)                                                                                                                                                                                                                                   cgccCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTgggcggctcacagtttatcgggtagaggtgcctatcgctctggcactcaagaaatcgggtcatccccggtacgaggataagcatggg                                                                                                                  >  1:344513‑M2/1‑36 (MQ=255)                                                                                                                                                                                                                                   cgccCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATGCCGCCTCGCGCAAGGTCGTGCCCTCGCTGTAAGCCTTCTTGGCAATTTCTGCCGCCTTGTCATAGCCAATTTGCGGGTTCAgccc           >  2:669324/1‑224 (MQ=255)                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                       TCCAGTTGAGTGCTCAATGGACATTTGAAATTGGTTATACCCACTATGCGGTCCGTTTGGGGCACTCTTTGCCGGAAACTCGCGCATTTGTGCAAAGACATCGGCCGACGCAAGGCGATTTTCATTACATGTGGGAAAGTCTGACCCATGCTTATCCTCGTACCGGGGATGACCCGATTTCTTGAGTGCCAGAGCGATAGGCACCTCTACCCGATAAACTGTGAGCCGCCCGTGGTGCGGTGCCGAGGTGATGAGGCAACCTGGGCGGCTCATGGGGGAATCTAGCCTTTGCCCCCAGGCGCCAGCATGTTCTCCGGCCGCACCCACTGGTCGAACTGTTCATTGGTCAGGTACTTCAACGCCAATGCCGCCTCGCGCAAGGTCGTGCCCTCGCTGTAAGCCTTCTTGGCAATTTCTGCCGCCTTGTCATAGCCAATATGCGGGTTCAGCGCCGTCACCAG  >  AE015451/1957388‑1957848

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.