New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2020506	38 (0.950)	3 (0.080)	3/326	NT	7.3%	coding (459/1416 nt)	PP_1798	Outer membrane efflux protein
	?	AE015451	= 2020515	39 (1.010)					coding (468/1416 nt)	PP_1798	Outer membrane efflux protein

AGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAGCGCGACCTCTATAACACCGAAACCTATTCGCTCAGTCTCACCCAGTACCTGTACAACAAGCCAGCCTGGGAGCGCTACCAGAAGTCCAAGAGCGTGAAGGATCAAAAAGGTCATGAAGCTGAAGACACGCTGGCAGAGGCTACAGTCGACCTCGCCAAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2020269‑2020506 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgcCACGAAGTAGCGCTTGGCGAGGTCGACTGTAGCCTCTGCCAGCGTGTCTTCAGCTTCATGACCTTTTTGATCCTTCACGCTCTTGGACTTCTGGTAGCGCTCCCAGGCTGGCTTGTTGTACAGGTACTGGGTGAGACTGAGCGAATAGGTTTCGGTGTTATAGA  <  AE015451/2020515‑2020352                                                                                                                                                                                                                                                                                                                                                                                                                    AGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAGCGCGACCTCTATAACACCGAAACCTATTCGCTCAGTCTCACCCAGTACCTGTACAACAAGCCAGCCTGGGAGCGCTACCAGAAGTCCAAGAGCGTGAAGGATCAAAAAGGTCATGAAGCCGAAGACACGCTGGCAGAGGCTACAGTCGACCTCGCCAAGC                                                                                                                                                                        >  1:737159/1‑236     CTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAGCGCGACCTCTATAACACCGAAACCTATTCGCTCAGTCTCACCCAGTACCTGTACAACAAGCCAGCCTGGGAGCGCTACCAGAAGTCCAAGAGCGTGAAGGATCAAAAAGGTCATGAAGCTGAAGACACGCTGGCAGAGGCTACAGTCGACCTCGCCAA                                                                                                                                                                          <  1:491059/230‑1                                                                                                                             CTGTACAACAAGCCAGCCTGGGAGCGCTACCAGAAGTCCAAGAGCGTGAAGGATCAAAAAGGTCATGAAGCTGAAGACAGGCTGGCAGAGGCTACAGTCGACCTCGCCAAGCGCCACGAAGTAGCGCTTGGCGAGGTCGACTGTAGCCTCTGCCAGCGTGTCTTCAGCTTCATGA                                                                                                         >  2:413852/1‑175                                                                                                                                                                       AGCGTGAAGGATCAAAAAGGTCATGAAGCTGAAGACACGCTGGCAGAGGCTACAGTCGACCTCGCCAAGCGCCACGAAGTAGCGCTTGGCGAGGTCGACTGTAGCCTCTGCCAGCGTGTCTTCAGCTTCATGACCTTTTTGATCCTTCACGCTCTTGGACTTCTGGTAGCGCTCCCAGGCTGGCTTGTTGTACAGGTACTGGGTGAGACTGAGCGAATAGGTTTCGGTGTTATAGA  >  1:483755/1‑236                                                                                                                                                                               GGATCAAAAACGTCATGAAGCTGAAGACACGCTGGCAGAGGCTACAGTCGACCTCGCCAAGCGCCACGAAGTAGCGCTTGGCGAGGTCGACTGTAGCCTCTGCCAGCGTGTCTTCAGCTTCATGACCTTTTTGATCCTTCACGCTCTTGGACTTCTGGTAGCGCTCCCAGGCTGGCTTGTTGTACAGGTACTGGGTGAGACTGAGCGAATAGGTT               <  2:483754/215‑1                                                                                                                                                                                                                                             GCCACGAAGTAGCGCTTGGCGAGGTCGACTGTAGCTTCTGCCCGCGTGTCTTCAGCTTCATGACCTTTTTGATCCTTCACGCTCTTGGACTTCTGGTAGCGCTCCCAGGCTGGCTTGTTGTACAGGTACTGGGTGAGACTGAGCGAATAGG                 <  2:703877/151‑1                                                                                                                                                                                                                                                                                                                                                                                                                    AGCGCTGGGTAGCCTGCTGCCCCAGGTGTCGGCCAATGCCAACTCCAGCCGCATCCTGCGCAAGAACGAGGCTGAGCGCGACCTCTATAACACCGAAACCTATTCGCTCAGTCTCACCCAGTACCTGTACAACAAGCCAGCCTGGGAGCGCTACCAGAAGTCCAAGAGCGTGAAGGATCAAAAAGGTCATGAAGCTGAAGACACGCTGGCAGAGGCTACAGTCGACCTCGCCAAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2020269‑2020506 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgcCACGAAGTAGCGCTTGGCGAGGTCGACTGTAGCCTCTGCCAGCGTGTCTTCAGCTTCATGACCTTTTTGATCCTTCACGCTCTTGGACTTCTGGTAGCGCTCCCAGGCTGGCTTGTTGTACAGGTACTGGGTGAGACTGAGCGAATAGGTTTCGGTGTTATAGA  <  AE015451/2020515‑2020352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.