New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2054713 =	50 (1.250)	3 (0.080)	3/310	NT	6.2%	intergenic (‑88/‑147)	PP_1829/aroC	Hydrolase, alpha/beta fold family/Chorismate synthase
	?	AE015451	2054775 =	44 (1.190)					intergenic (‑150/‑85)	PP_1829/aroC	Hydrolase, alpha/beta fold family/Chorismate synthase

GGCATCCATCGACAATGGCGACCAACGCCGGGCCATGGCTCTCGCCAGCGGTGGTGACAGTGAACAGCTTGCCGTAGGTATTGCCGGACATGGACGCTCCGCGAGTTCTGCCTGAAATGGACGAAAGCAGCAGTATACAGATGGTTGGGTGGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACGGTCACCACCAGGTTCCAATGGTGTGCAGCCCCCGTAGGAGCGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2054950‑2054713 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggttTACCCGCGAAGAGGCCAGCACAGGCCACCCAACCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCC  >  AE015451/2054775‑2055008                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGCATCCATCGACAATGGCGACCAACGCCGGGCCATGGCTCTCGCCAGCGGTGGTGACAGTGAACAGCTTGCCGTAGGTATTGCCGGACATGGACGCTCCGCGAGTTCTGCCTGAAATGGACGAAAGCAGCAGTATACAGATGGTTGGGTGGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACGGTCACCACCAGGTTCCAATGGTGTGCAGCCCCCGTAGGAGCGG                                                                                                                                                                                                                                               >  1:692128/1‑235                                                                                                                                                                                                         CAGGTTCCAATGGTGTGCAGCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCCACCCAACCATCT                                                                                                                                                                                                      >  2:630076/1‑76                                                                                                                                                                                                         CAGGTTACAATGGTGTGCAGCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCCACCCAACCATCT                                                                                                                                                                                                      <  1:630077/76‑1                                                                                                                                                                                                          AGGTTCCAATGGTGTGCAGCCCCCGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCCACCCAACCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGC                                                    >  1:427103/1‑221                                                                                                                                                                                                                                    tGGAGCGGGTTTACCCGCGAAGAGGCCAGTACAGGCCACCCAACCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGC                                                                                                                                  <  1:410555/116‑1                                                                                                                                                                                                                                    AGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCCACCCAACCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGC                                                                                                                                  >  2:410554/1‑117                                                                                                                                                                                                                                     GGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGGCCACCCAACCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGACATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGG          >  1:108976/1‑236                                                                                                                                                                                                                                     GGAGCGGGTTCACCCGCGAAAGGGCCAGCACAGGCCACCCAACCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCACGCTGTTCACTGTCACCACCG                                                                                                            >  2:82522/1‑138                                                                                                                                                                                                                                           GGTTTACCCGCGAAGAGGCCAGCACAGGCCACCCAACCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCCGAACTCGCGGAGCGTCCATGTCCG                                                                                                                                                <  2:409515/96‑1                                                                                                                                                                                                                                              TTACCCGCGAAGAGGCCAGCACAGGCCACCCAACCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCC  >  1:305600/1‑235                                                                                                                                                                                                                                              TTACCCGCGAAGAGGCCAGCACAGGCCACCCAACCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCC  >  1:685467/1‑235                                                                                                                                                                                                                                              TTACCCGCGAAGAGGCCAGCACAGGCCACCCAACCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCT                 >  2:566245/1‑220                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGCATCCATCGACAATGGCGACCAACGCCGGGCCATGGCTCTCGCCAGCGGTGGTGACAGTGAACAGCTTGCCGTAGGTATTGCCGGACATGGACGCTCCGCGAGTTCTGCCTGAAATGGACGAAAGCAGCAGTATACAGATGGTTGGGTGGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACACGGTCACCACCAGGTTCCAATGGTGTGCAGCCCCCGTAGGAGCGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2054950‑2054713 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggttTACCCGCGAAGAGGCCAGCACAGGCCACCCAACCATCTGTATACTGCTGCTTTCGTCCATTTCAGGCAGAACTCGCGGAGCGTCCATGTCCGGCAATACCTACGGCAAGCTGTTCACTGTCACCACCGCTGGCGAGAGCCATGGCCCGGCGTTGGTCGCCATTGTCGATGGATGCCCACCGGGCCTGGAAATTTCCCTCGCCGACCTGCAGCACGACCTTGACCGGCGCAAGCC  >  AE015451/2054775‑2055008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.