New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2321086 =	44 (1.100)	4 (0.110)	4/304	NT	9.3%	coding (155/945 nt)	PP_2041	Transcriptional regulator, LysR family
	?	AE015451	2321102 =	38 (1.050)					coding (139/945 nt)	PP_2041	Transcriptional regulator, LysR family

AATGACTTTGAAACAGCTGCGTTATTTGATCGCCATTGTCGAAGCCGGCAGTTTTTCCAATGCCGCACGCCAGGCGTTCATCGCCCAACCGGCCTTGAGCCGACAGATAGGCCTGCTGGAGAGCGAACTGGAAATGCAACTGCTGGCGCGCCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2321241‑2321086 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctggcgcgccagcaGTTGCATTTCCAGTTCGCTCTCCAGCAGGCCTATCTGTCGGCTCAAGGCCGGTTGGGCGATGAACGCCTGGCGTGCGGCATTGGAAAAACTGCCGGCTTCGACAATGGCGATCAAATAACGCAGCTGTTTCAAAGTCATTGTGGTTCTCAGGCTAT  >  AE015451/2321102‑2321257                                                                                                                                                                                                                                                                                                                          AATGACTTTGAAACAGCTGCGTTATTTGATCGCCATTGTCGAAGCCGGCAGTTTTTCCAATGCCGCACGCCAGGCGTTCATCGCCCAACCGGCCTTGAGCCGACAGATAGGCCTGCTGGAGAGCGAACTGGAAATGCAACTGCTGGC                                                                                                                                                                       <  2:717139/147‑1                                                                     GCCAGGCGTTCATCGCCCAACCGGCCTTGAGCCGACAGATAGGCCTGCTGGAGAGCGAACTGGAAATGCAACTGCTGGCGCGCCAGCAGTTGCATTTCCAGTTCGCTCTCCAGCAGGCCTATCTGTCGGCTCAAGGCCGGTTGGGCGATGAACGCCTGGCGTGCGGCATTGGAAAAA                                                                     >  2:359630/1‑177                                                                                               TTGAGCCGACAGATAGGCCTGCTGGAGAGCGAACTGGAAATGCAACTGCTGGCGCGCCAGCAGTTGCATTTCCAGTTCGCTCTCCAGCAGGCCTATCTGTCGGCTCAAGGCCGGTTGGGCGATGAACGCCTGGCGTGCGGCATTGGAAAAACTGCCGGCTTCGACAATGGCGATCAAATAACGCAGCTGTTTCAAAGTCATTGTGGTTCTCAG       >  1:746945/1‑213                                                                                               TTGAGCCGACAGATAGGCCTGCTGGAGAGCGAACTGGAAATGCAACTGCTGGCGCGCCAGCAGTTGCATTTCCAGTTCGCTCTCCAGCAGGCCTATCTGTCGGCTCAAGGCCGGTTGGGCGATGAACGCCTGGCGTGCGGCATTGGAAAAACTGCCGGCTTCGACAATGGCGATCAAATAACGCAGCTGTTTCAAAGTCATTGTGGTTCTCAG       <  2:746944/213‑1                                                                                                                     TGGAGAGCGAACTGGAAATGCAACTGCTGGCGCGCCAGCAGTTGCATTTCCAGTTCGCTCTCCAGCAGGCCTATCTGTCGGCTCAAGGCCGGTTGGGCGATGAACGCCTGGCGTGCGGCATTGGAAAAACTGCCGGCTTCGACAATGGCGATCAAATAACGCAGCTGTTTCAAAGTCAT                   <  1:359631/179‑1                                                                                                                                                       CCAGCAGTTGCATTTCCAGTTCGCTCTCCAGCAGGCCTATCTGTCGGCTCAAGGCCGGTTGGGCGATGACCGCCTGGCGTGCGGCATTGGAAAAACTGCCGGCTTCGACAATGGCGATCAAATAACGCAGCTGTTTCAAAGTCACTGTGGTTCTCAGGCT    <  2:302616/160‑1                                                                                                                                                          GCAGTTGCATTTCCAGTTCGCTCTCCAGCTGGCCTATCTGTCGGCTCAAGGCCGGTTGGGCGATGAACGCCTGGCGTGCGGCATTGGAAAAACTGCCGGCTTCGACAATGGCGATCAAATAACGCAGCTGTTTCAAAGTCATTGTGGTTCTCAGGCTAT  <  2:336880/159‑1                                                                                                                                                                                                                                                                                                                          AATGACTTTGAAACAGCTGCGTTATTTGATCGCCATTGTCGAAGCCGGCAGTTTTTCCAATGCCGCACGCCAGGCGTTCATCGCCCAACCGGCCTTGAGCCGACAGATAGGCCTGCTGGAGAGCGAACTGGAAATGCAACTGCTGGCGCGCCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2321241‑2321086 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctggcgcgccagcaGTTGCATTTCCAGTTCGCTCTCCAGCAGGCCTATCTGTCGGCTCAAGGCCGGTTGGGCGATGAACGCCTGGCGTGCGGCATTGGAAAAACTGCCGGCTTCGACAATGGCGATCAAATAACGCAGCTGTTTCAAAGTCATTGTGGTTCTCAGGCTAT  >  AE015451/2321102‑2321257

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.