New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2529011	31 (0.780)	3 (0.080)	3/316	NT	10.5%	intergenic (+138/‑269)	PP_2217/PP_2218	enoyl‑CoA hydratase/transposase
	?	AE015451	= 4908014	22 (0.590)					coding (11/198 nt)	PP_4317	conserved protein of unknown function

CTTTCTCCACCGAAGACCAGAAAGAAGGCATGGCCGCATTCATCGCCAAGCGTGAGGCACAGTTCAAGGACCGTTGATCAGACTCGGTTCGTTGCCGTTGCCGTTGCCGTGGCTTTTGCTTCTAAGTGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2528797‑2529011 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcccgtcaCCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAACAGCAACAACAGCACAGTACAGTTTTGCCTTGTTATTTCCATTGACTGTACTGGCCGGTGACTCCGCATAATGACGCCTCGAATTCACCCGGAGGTGGCAT  <  AE015451/4908014‑4907787                                                                                                                                                                                                                                                                                                                                                                                                                                                             CTTTCTCCACCGAAGACCAGAAAGAAGGCATGGCCGCATTCATCGCCAAGCGTGAGGCACAGTTCAAGGACCGTTGATCAGACTCGGTTCGTTGCCGTTGCCGTTGCCGTGGCTTTTGCTTCTAAGTGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCACCTGCCTCCGCAAGGCCTG                                                                                                                                                                                                                   >  1:261854/1‑234    TCTCCACCGAAGACCAGAAAGAAGGCATGGCCGCATTCATCGCCAAGCGTGAGGCACAGTTCAAGGACCGTTGATCAGACTCGGTTCGTTGCCGTTGCCGTTGCCGTGGCTTTTGCTTCTAAGTGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGCGGCCGAGCGTAGGGCGTGCGGAGGGAGGTGACGGGCCTGGAGGCCCG                                                                                                                                                                                                                                         >  2:87950/1‑209       CCACCGAAGACCAGAAAGAAGGCATGGCCGCATTCATCGCCAAGCGTGAGGCACAGTTCAAGGACCGTTGATCAGACTCCGTTCGTTGCCGTTGCCGTTGCCGTGGCTTTTGCTTCTAAGTGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGGAGGGAGGTGACGGGCATGGA                                                                                                                                                                                                                                               <  1:517381/200‑1                                      ATTCATCGCCAAGCGTGAGGCACAGTTCAAGGACCGTTGATCAGACTCGGTTCGTTGCCGTTGCCGTTGCCGTGGCTTTTGCTTCTAAGTGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGA                                                                                                                                                                                                    >  1:459533/1‑212                                                                          TTGATCAGACTCGGTTCGTTGCCGTTGCCGTTGCCGTGGCTTTTGCTTCTAAGTGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCC                                                                                                                                                                                                                                           >  2:239314/1‑137                                                                                                       GTTGCCGTGGCTTTTGCTTCTAAGTGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAG                                                                                                                                                            >  2:655523/1‑187                                                                                                                                                                                                              ATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAACAGCAACAACAGCACAGTACAGTTTTGCCTTGTT                                                                     >  2:720475/1‑171                                                                                                                                                                                                                 CCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAACAGCAACAACAGCACAGTACAGTTTTGCCTTGTTATTTCCATTGACTGTACTGGCCGGTGACTCCGCATAATGACGCCTCGAATTCACCCGGAGGTGGCAT  <  2:525877/235‑1                                                                                                                                                                                                                    GTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAACAGCAACAACAGCACAGTACAGGTTTGCCTTGTTATTTCCATTGACTGTACTGGCCGGTGACTCCGCATAATGACGCCTCGAATTCACCC             >  1:88946/1‑221                                                                                                                                                                                                                     TCACATGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAACAGCAACAACAGCACAGTACAGTTTTGCCTTGTTATTTCCATTGACTGTACTGGCCGGTGA                                          <  2:637992/191‑1                                                                                                                                                                                                                      CACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAACAGCAACAACAGCACAGTACA                                                                                  <  2:138690/150‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                             CTTTCTCCACCGAAGACCAGAAAGAAGGCATGGCCGCATTCATCGCCAAGCGTGAGGCACAGTTCAAGGACCGTTGATCAGACTCGGTTCGTTGCCGTTGCCGTTGCCGTGGCTTTTGCTTCTAAGTGCGCGATAGTTCAGGCGACGCAGATTGCGACTTCAGGAGGCCGAGCGTAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2528797‑2529011 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcccgtcaCCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAAGATCAACGGCAACGGCAACGGCAACGGCAACGGCAACAGCAACAGCAACAACAGCACAGTACAGTTTTGCCTTGTTATTTCCATTGACTGTACTGGCCGGTGACTCCGCATAATGACGCCTCGAATTCACCCGGAGGTGGCAT  <  AE015451/4908014‑4907787

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.