New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2749686 =	38 (0.950)	4 (0.100)	4/322	NT	10.9%	coding (804/849 nt)	PP_2406	putative quinate/shikimate dehydrogenase
	?	AE015451	2749762 =	29 (0.760)					coding (728/849 nt)	PP_2406	putative quinate/shikimate dehydrogenase

ATCATCTACTTCCCGCTGGAGACCGAACTGCTGCGCGCGGCCCGGGCACTGGGCTGCCGCACGCTGGATGGCAGCAACATGGCGGTGTTCCAGGCGGTGAAGGCATTCGAGCTGTTCAGCGGGCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2749814‑2749686 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcagCCCAGTGCCCGGGCCGCGCGCAGCAGTTCGGTCTCCAGCGGGAAGTAGATGATCTCTGCCACCCACAGGCGGGGATGCAACAACTCCACCGGCAGTGGCGTGCCCGGTAGCTTGGCCATGCCCACCGGCGTGGTGTTGACCAGCCCGTCCGCTTCGGCCAAGGCTGTGGCCAGGTCGGTGCCA  >  AE015451/2749762‑2749944                                                                                                                                                                                                                                                                                                                          ATCATCTACTTCCCGCTGGAGACCGAACTGCTGCGCGCGGCCCGGGCGCTGGGCTGCCGCACGCTGGATGGCAGCAACATGGCGGTGTCCCAGGCGGTGAAGGCATTCGAGCTGTTCAGCGGGCGGCAGCCCAGTGCCCGGGCCGCGCGCAGCAGTTCGGTCTC                                                                                                                                                      <  1:557040/164‑1                               CTGCGCGCGGCCCGGGCACTGGGCTGCCGCACGCTGGATGGCAGCAACATGGCGGTGTTCCAGGCGGTGAAGGCATTCGAGCTGTTCAGCGGGCGGCAGCCCAGTGCCCGGGCCGCGCGCAGCAGTTCGGT                                                                                                                                                         <  2:351143/131‑1                                                                                                       GCATTCGAGCTGTTCAGCGGGCGGCAGGCCAGTGCCCGGGCCGCGCGCAGCAGTTCGGTCTCCAGCGGGAAGTAGATGATCTCTGCCACCCACAGGCGGGGATGCAACAACTCCACCGGCAGTGGCGTGCCCGGTAGCTTGGCCATGCCCACCGGCGTGGTGTTGACCAGCCCGTCCGCTTCGGCCAAGGCTGTGGCCAGGTCGGTGCCA  <  1:459311/210‑1                                                                                                       GCATTCGAGCTGTTCAGCGGGCGGCAGGCCAGTGCCCGGGCCGCGCGCAGCAGTTCGGTCTCCAGCGGGAAGTAGATGATCTCTGCCACCCACAGGCGGGGATGCAACAACTCCACCGGCAGTGGCGTGCCCGGTAGCTTGGCCATGCCCACCGGCGTGGTGTTGACCAGCCCGTCCGCTTCGGCCAAGGCTGTGGCCAGGTCGGTGCCA  >  2:459310/1‑210                                                                                                                                                                                                                                                                                                                          ATCATCTACTTCCCGCTGGAGACCGAACTGCTGCGCGCGGCCCGGGCACTGGGCTGCCGCACGCTGGATGGCAGCAACATGGCGGTGTTCCAGGCGGTGAAGGCATTCGAGCTGTTCAGCGGGCGGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2749814‑2749686 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcagCCCAGTGCCCGGGCCGCGCGCAGCAGTTCGGTCTCCAGCGGGAAGTAGATGATCTCTGCCACCCACAGGCGGGGATGCAACAACTCCACCGGCAGTGGCGTGCCCGGTAGCTTGGCCATGCCCACCGGCGTGGTGTTGACCAGCCCGTCCGCTTCGGCCAAGGCTGTGGCCAGGTCGGTGCCA  >  AE015451/2749762‑2749944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.