New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3193915 =	33 (0.830)	3 (0.080)	3/324	NT	8.4%	coding (955/1332 nt)	PP_2802	Amino acid permease family protein
	?	AE015451	3193939 =	34 (0.880)					coding (931/1332 nt)	PP_2802	Amino acid permease family protein

CCTCCCCCACGTTCGAGCTTGTGGACGGGGCCGCCTTCGAGATTGCCCGGATGATCGGCGGCGACCTGTTCTTCGCCGTGGTCCTGACCGGGATCATCGTCGCCCACTTCGCTGCGGGGATGTCATTCCAGGCCAGCGTGGGCCGGCTGCTCTACGCCCTTGGCCGGGACAACCAACTGCCCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3194100‑3193915 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggcCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATCCGGGCAATCTCGAAGGCGGCCCCGTCCACAAGCT  >  AE015451/3193939‑3194085                                                                                                                                                                                                                                                                                                                                               CCTCCCCCACGTTCGAGCTTGTGGACGGGGCCGCCTTCGAGATTGCCCGGATGATCGGCGGCGACCTGTTCTTCGCCGTGGTCCTGACCGGGATCATCGTCGCCCACTTCGCTGCGGGGATGTCATTCCAGGCCAGCGTGGGCCGGCTGCTCTACGCCCTTGGCCGGGACAACCAACTGCCCCGG                                                                                                                                                      >  2:346852/1‑185                  CTTGTGGACGGGGCCGCCTTCGAGATTGCCCGGATGATCGGCGGCGACCTGTTCTTCGCCGTGGTCCTGACCGGGATCATCGTCGCCCACTTCGCTGCGGGGATGTCATTCCAGGCCAGCGTGGGCCGGCTGCTCTACGCCCTTGGCCGGGACAACCAACTGCCCCGGCCAAGGGCGTAGAGC                                                                                                                                       <  2:280218/183‑1                                               CCGGATGATCGGCGGCGACCTGTTCTTCGCCGTGGTCCTGACCGGGATCATCGTCGCCCACTTCGCTGCTGGGATGTCATTCCAGGCCAGCGTGGGCCGGCTGCTCTACGCCCTTGGCCGGGACAACCAACTGCCCCGGCCAAGGGAGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACA                                                                                                           >  2:406419/1‑182                                               CCGGATGATCGGCGGCGACCTGTTCTTCGCCGTGGTCCTGACCGGGATCATCGTCGCCCACTTCGCTGCGGGGATGTCATTCCAGGCCAGCGTGGGCCGGCTGCTCTACGCCCTTGGCCGGGACAACCAACTGCCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACA                                                                                                           <  1:406420/182‑1                                                                                                                                                                                          CCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATCCGGGCAATCTCGAAGGCGGCCCCGTCCACAAGCT  >  2:474631/1‑148                                                                                                                                                                                                                                                                                                                                               CCTCCCCCACGTTCGAGCTTGTGGACGGGGCCGCCTTCGAGATTGCCCGGATGATCGGCGGCGACCTGTTCTTCGCCGTGGTCCTGACCGGGATCATCGTCGCCCACTTCGCTGCGGGGATGTCATTCCAGGCCAGCGTGGGCCGGCTGCTCTACGCCCTTGGCCGGGACAACCAACTGCCCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3194100‑3193915 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccggcCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATCCGGGCAATCTCGAAGGCGGCCCCGTCCACAAGCT  >  AE015451/3193939‑3194085

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.