New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3193915 =	33 (0.830)	3 (0.080)	3/324	NT	8.4%	coding (955/1332 nt)	PP_2802	Amino acid permease family protein
	?	AE015451	3193939 =	34 (0.880)					coding (931/1332 nt)	PP_2802	Amino acid permease family protein

CTTGACGCGCGCATCGAAGGTGAGCCGCAAGGCGCACAGGTTGACGGCGGTGAAGGCGAGAAAGGCGCCGAAGTTGACCAGGGAAGTCGCGGTTGCGATCGTCAGGCCAAACCCGGCGGTGCCGAAAACACCGCACAGCAAGATGTTGAAGGCCGGGGTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATCCGGGCAATCTCGAAGGCGGCCCCGTCCACAAGCTCGAACGTGGGGGAGGGGTGCGCCAGGTACATGAAGTACGAGGAGCCGACGTAGACCGAACCGCCGATCAAGGC  >  AE015451/3193724‑3194158                                                                                                                                                                                                                        |                                                                                                                                                                                                                            cTTGACGCGCGCATCGAAGGTGAGCCGCAAGGCGCACAGGTTGACGGCGGTGAAGGCGAGAAAGGCGCCGAAGTTGACCAGGGAAGTCGCGGTTGCGATCGTCAGGCCAAACCCGGCGGTGCCGAAAACACCGCACAGCAAGATGTTGAAGGCCGGGGTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGagc                                                                                                                                                                                                                <  2:315814/229‑1 (MQ=255)                               ggCGCACAGGTTGACGGCGGTGAAGGCGAGAAAGGCGCCGAAGTTGACCAGGGAAGTCGCGGTTGCGATCGTCAGGCCAAACCCGGCGGTGCCGAAAACACCGCACAGCAAGATGTTGAAGGCCGGGGTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGc                                                                                                                                                                             >  1:610389/1‑234 (MQ=255)                               ggCGCACAGGTTGACGGCGGTGAAGGCGAGAAAGGCGCCGAAGTTGACCAGGGAAGTCGCGGTTGCGATCGTCAGGCCAAACCCGGCGGTGCCGAAAACACCGCACAGCAAGATGTTGAAGGCC‑GGGTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGGCGAGCAGCCGGCCCACg                                                                                                                                                                                                    >  2:691758/1‑210 (MQ=255)                                     caGGTTGACGGCGGTGAAGGCGAGAAAGGCGCCGAAGTTGACCAGGGAAGTCGCGGTTGCGATCGTCAGGCCAAACCCGGCGGTGCCGAAAACACCGCACAGCAAGATGTTGAAGGCCGGGGTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGc                                                                                                                                                                          <  2:610388/231‑1 (MQ=255)                                               cttgtggacggggccgccttcgagattgcccggatgatcggcggcgacctgttcttcgccgtggtcctgaccgggatcatcgtcgcccacttcgctgcggggatgtcattccaggccagcgtgggccggctgctctacgcccttggccgggacaaccaactgccccggcCAAGGGCGTAGagc                                                                                                                                                                                                                <  2:280218‑M2/14‑1 (MQ=255)                                                     aaGGCGAGAAAGGCGCCGAAGTTGACCAGGGAAGTCGCGGTTGCGATCGTCAGGCCAAACCCGGCGGTGCCGAAAACACCGCACAGCAAGATGTTGAAGGCCGGGGTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGt                                                                                                                                                                     <  2:716879/220‑1 (MQ=255)                                                     aaGGCGAGAAAGGCGCCGAAGTTGACCAGGGAAGTCGCGGTTGCGATCGTCAGGCCAAACCCGGCGGTGCCGAAAACACCGCACAGCAAGATGTTGAAGGCCGGGGTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGt                                                                                                                                                                     >  1:716880/1‑220 (MQ=255)                                                              gaGGCGCCGAAGTTGACCAGGGAAGTCGCGGTTGCGATCGTCAGGCCAAACCCGGCGGTGCCGAAAACACCGCACAGCAAGATGTTGAAGGCCGGGGTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGc                                                                                                                                                                          <  1:600429/205‑1 (MQ=255)                                                              aaGGCGCCGAAGTTGACCAGGGAAGTCGCGGTTGCGATCGTCAGGCCAAACCCGGCGGTGCCGAAAACACCGCACAGCAAGATGTTGAAGGCCGGGGTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGa                                                                                                                                             <  1:40304/235‑1 (MQ=255)                                                                            ccggatgatcggcggcgacctgttcttcgccgtggtcctgaccgggatcatcgtcgcccacttcgctgctgggatgtcattccaggccagcgtgggccggctgctctacgcccttggccgggacaaccaactgccccggcCAAGGGAGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACa                                                                                                                                                                                    >  2:406419‑M2/141‑182 (MQ=255)                                                                            ccggatgatcggcggcgacctgttcttcgccgtggtcctgaccgggatcatcgtcgcccacttcgctgcggggatgtcattccaggccagcgtgggccggctgctctacgcccttggccgggacaaccaactgccccggcCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACa                                                                                                                                                                                    <  1:406420‑M2/42‑1 (MQ=255)                                                                                aGGGAAGTCGCGGTTGCGATCGTCAGGCCAAACCCGGCGGTGCCGAAAACACCGCACAGCAAGATGTTGAAGGCCGGGGTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGACGAACAGGTc                                                                                                                          >  1:225844/1‑236 (MQ=255)                                                                                    aaGTCGCGGTTGCGATCGTCAGGCCAAACCCGGCGGTGCCGAAAACACCGCACAGCAAGATGTTGAAGGCCGGGGTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTcg                                                                                                                         >  2:664744/1‑233 (MQ=255)                                                                                                   tCGTCAGGCCAAACCCGGCGGTGCCGAAAACACCGCACAGCAAGATGTTGAAGGCCGGGGTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATcc                                                                                                            <  2:464236/231‑1 (MQ=255)                                                                                                                 ccGGCGGTGCCGAAAACACCGCACAGCAAGATGTTGAAGGCCGGGGTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATCCGGGCAATCTCGAAggcg                                                                                           <  2:652451/234‑1 (MQ=255)                                                                                                                  cggcggTGCCGAAAACACCGCACAGCAAGATGTTGAAGGCCGGGGTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACa                                                                                                                                                                                    >  2:303887/1‑144 (MQ=255)                                                                                                                  cggcggTGCCGAAAACACCGCACAGCAAGATGTTGAAGGCCGGGGTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACa                                                                                                                                                                                    <  1:303888/144‑1 (MQ=255)                                                                                                                        tGCCGAAAACACCGCACAGCAAGATGTTGAAGGCCGGGGTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGGCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACa                                                                                                                                                                                    <  1:447422/138‑1 (MQ=255)                                                                                                                                            aaGATGTTGAAGGCCGGGGTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATCCGGGCAATCTCGAAGGCGGCCCCGTCCACAAGCTCGAACGTgggg                                                                >  1:361553/1‑234 (MQ=255)                                                                                                                                              gATGTTGAAGGCCGGGGTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCa                                                                                                                                                                            <  1:155088/124‑1 (MQ=255)                                                                                                                                                  tggAAGGCCGGGGTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATCCGGGCAATCTCGAAGGCGGCCCCGTCCACAAGCTCGAACGTGGGGGAGGGGTg                                                        <  1:227960/234‑1 (MQ=255)                                                                                                                                                    gAAGGCCGGGGTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATCCGGGCAATCTCGAAGGCGGCCCCGTCCACAAGCTCGAACGTGGGGGAGGGGGgcg                                                      >  1:204110/1‑236 (MQ=255)                                                                                                                                                      tgtcattccaggccagcgtgggccggctgctctactcccttgGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCAGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATCCgg                                                                                                          >  2:406419‑M1/43‑182 (MQ=255)                                                                                                                                                      tgtcattccaggccagcgtgggccggctgctctacgcccttgGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATCCgg                                                                                                          <  1:406420‑M1/140‑1 (MQ=255)                                                                                                                                                      aGGCCGGGGTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCAGCCGGGCAATCTCGAAGGCGGCCCCGTCCACAAGCCCGAACGTgggg                                                                >  1:443893/1‑224 (MQ=255)                                                                                                                                                        gCCGGGGTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATcccc                                                                                                                                                                               >  1:570784/1‑111 (MQ=255)                                                                                                                                                             ggTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACa                                                                                                                              >  2:142251/1‑155 (MQ=255)                                                                                                                                                             ggTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATCCGGGCAATCTCGAAGGCGGCCCCGTCCACAAGCTCGAACGTGGGGGCgg                                                            >  2:326270/1‑221 (MQ=255)                                                                                                                                                              gTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATCCGGGCAATCTCGAAGGCGGCCCCGTCCACAAGCTCGAACGTGGGGGAGGGGTGCGCCAGGTa                                               <  1:133515/233‑1 (MQ=255)                                                                                                                                                               tCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATCCGGGc                                                                                                        >  1:96121/1‑175 (MQ=255)                                                                                                                                                                    tAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGTCAGTTGGTGGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAAc                                                                                                                               <  2:32036/147‑1 (MQ=255)                                                                                                                                                                            gTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATCCGGGCAATCTCGAAGGCGGCCCCGTCCACAAGCTCGAACGTGGGGGAGGGGTGCGCCAGGTACATGAAGTACGAGGAGc                              >  1:650134/1‑236 (MQ=255)                                                                                                                                                                            gTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATCCGGGCAATCTCGAAGGCGGCCCCGTCCACAAGCTCGAACGTGGGGGAGGGGTGCGCCAGGGACATGAAGTACgag                                  >  1:216362/1‑232 (MQ=255)                                                                                                                                                                              gCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATCCGGGCAATCTCGAAGGCGGCCCCGTCCACAAGCTCGAACGTGGGGGAGGGGTGCGCCAGGTACATGAAg                                        >  1:722466/1‑224 (MQ=255)                                                                                                                                                                               cAGCGCGCCGAACAGCCGCCGGGGCAGTTGGGTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGCCCACGGCGAAGAACAGGTCGCCGCCGATCATCCGGGCAATCTCGAAGGCGGCCCCGTCCACAAGCTCGAACGTGGGGGAGGGGTg                                                        <  1:154145/207‑1 (MQ=255)                                                                                                                                                                                  gctctacgcccttgGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATCCGGGCAATCTCGAAGGCGGCCCCGTCCACAAg                                                                             <  2:280218‑M1/169‑1 (MQ=255)                                                                                                                                                                                  cgcgcCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATCCGGGCAATCTCGAAGGCGGCCCCGTCCACAAGCTCGAACGTGGGGGAGGGGTGCGCCAGGTACATGAAGTACgag                                  <  2:650133/226‑1 (MQ=255)                                                                                                                                                                                              ccgccgGGGCGGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATCCGGGCAATCTCGAAGGCGGCCCCGTCCACAAGCTCGAACGTGGGGGAGGGGTGCGCCAGGTACATGAAGt                                       <  2:303979/209‑1 (MQ=255)                                                                                                                                                                                              ccgccgGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATCCGGGCAATCTCGAAGGCGGCCCCGTCCACAAGCTCGAACGTGGGGGAGGGGTGCGCCAGGTACATGAAGTACgagg                                 <  2:577293/215‑1 (MQ=255)                                                                                                                                                                                                 CCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATCCGGGCAATCTCGAAGGCGGCCCCGTCCACAAGCTCGAACGTGGGGGAgg                                                            >  2:346852‑M1/1‑185 (MQ=255)                                                                                                                                                                                                         gttggttgTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATCCGGGCAATCTCGAAGGCGGCCCCGTCCACAAGCTCGAACGTGGGGGAGGGGTGCGCCAGGTACATGAAGTACGAGGAGCCGACGTAGACCGAACCGCCGATCAAGGc  <  1:664745/235‑1 (MQ=255)                                                                                                                                                                                                                       cCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATCCGGGCAATCTCGAAGGCGGCCCCGTCCACAAGCt                                                                           >  2:474631‑M2/2‑148 (MQ=255)                                                                                                                                                                                                                        |                                                                                                                                                                                                                            CTTGACGCGCGCATCGAAGGTGAGCCGCAAGGCGCACAGGTTGACGGCGGTGAAGGCGAGAAAGGCGCCGAAGTTGACCAGGGAAGTCGCGGTTGCGATCGTCAGGCCAAACCCGGCGGTGCCGAAAACACCGCACAGCAAGATGTTGAAGGCCGGGGTCTTGTAGCGCGGGTGCAGCGCGCCGAACAGCCGCCGGGGCAGTTGGTTGTCCCGGCCAAGGGCGTAGAGCAGCCGGCCCACGCTGGCCTGGAATGACATCCCCGCAGCGAAGTGGGCGACGATGATCCCGGTCAGGACCACGGCGAAGAACAGGTCGCCGCCGATCATCCGGGCAATCTCGAAGGCGGCCCCGTCCACAAGCTCGAACGTGGGGGAGGGGTGCGCCAGGTACATGAAGTACGAGGAGCCGACGTAGACCGAACCGCCGATCAAGGC  >  AE015451/3193724‑3194158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.