New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3296493 =	36 (0.900)	4 (0.110)	3/320	NT	11.1%	coding (382/492 nt)	PP_2898	conserved exported protein of unknown function
	?	AE015451	3296511 =	30 (0.790)					coding (364/492 nt)	PP_2898	conserved exported protein of unknown function

CCATGCCGGTGCCAGCCAATGGCAACAACTGTGGCAACGCGTACGCCAGGCCGGCTACCTGCAGACCGACGCCGCACCGGTACATTTCAGCGGGCCCACAGCCCGCTTGCCCGACCTGGCCCGACAAACGCTGGCGCAGGCCGACCAGGCACAGCCACTGAATCAGACCCAGGTACTGTACCGCCGCCACTTTGCCGACCAGGTCATCGGCCAGCGCAACGGCCAGCCGTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3296725‑3296493 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgttgcGCTGGCCGATGACCTGGTCGGCAAAGTGGCGGCGGTACAGTACCTGGGTCTGATTCAGTGGCTGTGCCTGGTCGGCCTGCGCCAGCGTTTGTCGGGCCAGGTCGGGCAAGCGGGCTGTGGGCCCGCTGAAATGTACCGGTGCGGCGTCGGTCTGCAGGTAGCCGGCCTGGCGTACGCGTTGCCACAGTTGTTGCCATTGGCTGGCACCGGCATGGGTGGCCAACTCGC  >  AE015451/3296511‑3296738                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCATGCCGGTGCCAGCCAATGGCAACAACTGTGGCAACGCGTACGCCAGGCCGGCTACCTGCAGACCGACGCCGCACCGGTACATTTCAGCGGGCCCACAGCCCGCTTGCCCGACCTGGCCCGACAAACGCTGGCGCAGGCCGACCAGGCACAGCCACTGAATCAGACCCAGGTACTGTACCGCCGCCACTTTGCCGACCAGGTCATCGGCCAGCGCAACGGCCAGCCGTTGC                                                                                                                                                                                                                                      <  2:292387/233‑1      CCGGTGCCAGCCAATGGCAACAACTGTGGCAACGCGTACGCCAGGCCGGCTACCTGCAGACCGACGCCGCACCGGTACATTTCAGCGGGCCCACAGCCCGCTTGCCCGACCTGGCCCGACAAACGCTGGCGCAGGCCGACCAGGCACAGCCACTGAATCAGACCCAGGTACTGTACCGCCGCCACTTTGCCGACCAGGTCATCGGCCAGCGCAACGGCCAGCCG                                                                                                                                                                                                                                          >  1:333047/1‑224                   ATGGCAACAACTGTGGCAACGCGTACGCCAGGCCGGCTACCTGCAGACCGACGCCGCACCGGTACATTTCAGCGGGCCCACAGCCCGCTTGCCCGACCTGGCCCGACAAACGCTGGCGCAGGCCGACCAGGCACAGCCACTGAATCAGACCCAGGTACTGTACCGCCGCCACTTTGCCGACCAGGTCATCGGCCAGCGCAACGGCCAGCCGT                                                                                                                                                                                                                                         >  2:587102/1‑212                                        CGTACGCCAGGCCGGCTACCTGCAGACCGACGCCGCACCGGTACATTTCAGCGGGCCCACAGCCCGCTTGCCCGACCTGGCCCGACAAACGCTGGCGCAGGCCGACCAGGCACAGCCACTGAATCAGACCCAGGTACTGTACCGCCGCCACTTTGCCGACCAGGTCATCGGCCAGCGCAACGGCCAGCCGTTGCGCTGGCCGATGACCTGGTCGGCAAAGTGGCGGCGGTACAGT                                                                                                                                                                                             <  1:587103/235‑1                                                                                                                                                   AGGCACAGCCACTGAATCAGACCCAGGTACTGTACCGCCGCCACTTTGCCGACCAGGTCATCGGCCAGCGCAACGGCCAGCCGTTGCGCTGGCCGATGCCCTGGTCGGCAAAGTGGC                                                                                                                                                                                                        <  2:577928/117‑1                                                                                                                                                   AGGCACAGCCACTGAATCAGACCCAGGTACTGTACCGCCGCCACTTTGCCGACCAGGTCATCGGCCAGCGCAACGGCCAGCCGTTGCGCTGGCCGATGACCTGGTCGGCAAAGTGGC                                                                                                                                                                                                        >  1:577929/1‑117                                                                                                                                                                             GTACTGTACCGCCGCCACTTGGCCAACCAGGCCATCGGCCAGCGCAACGGCCAGCCGTTGCGCTGGCCGATGACCTGGTCGGCAAAGTGGC                                                                                                                                                                                                        <  2:626489/91‑1                                                                                                                                                                                      CGCCGCCACTTTGCCGACCAGGGCATCGGCCAGCGCAACGGCCAGCCGTT                                                                                                                                                                                                                                        <  2:234083/50‑1                                                                                                                                                                                                                                     GTTGCGCTGGCCGATGACCTGGTCGGCAAAGTGGCGGCGGTACAGTACCTGGGTCTGATTCAGTGGCTGTGCCTGGTCGGCCTGCGCCAGCGTTTGTCGGGCCAGGTCGGGCAAGCGGGCTGTGGGCCCGCTGAAATGTACCGGTGCGGCGTCGGTCTGCAGGTAGCCGGCCTGGCGTACGCGTTGCCACAGTTGTTGCCATTGGCTGGCACCGGCATGGGTGGCCAACTCGC  >  2:640031/1‑233                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CCATGCCGGTGCCAGCCAATGGCAACAACTGTGGCAACGCGTACGCCAGGCCGGCTACCTGCAGACCGACGCCGCACCGGTACATTTCAGCGGGCCCACAGCCCGCTTGCCCGACCTGGCCCGACAAACGCTGGCGCAGGCCGACCAGGCACAGCCACTGAATCAGACCCAGGTACTGTACCGCCGCCACTTTGCCGACCAGGTCATCGGCCAGCGCAACGGCCAGCCGTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3296725‑3296493 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgttgcGCTGGCCGATGACCTGGTCGGCAAAGTGGCGGCGGTACAGTACCTGGGTCTGATTCAGTGGCTGTGCCTGGTCGGCCTGCGCCAGCGTTTGTCGGGCCAGGTCGGGCAAGCGGGCTGTGGGCCCGCTGAAATGTACCGGTGCGGCGTCGGTCTGCAGGTAGCCGGCCTGGCGTACGCGTTGCCACAGTTGTTGCCATTGGCTGGCACCGGCATGGGTGGCCAACTCGC  >  AE015451/3296511‑3296738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.