New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3393646	26 (0.650)	3 (0.080)	3/318	NT	10.8%	coding (761/900 nt)	PP_2997	CnmA
	?	AE015451	= 3393657	25 (0.660)					coding (750/900 nt)	PP_2997	CnmA

CCGTGACTGATCTCTGTGCTTCACGAAGATGGGCTTGCGGCCATGGCGGATGGGCTGAATCACATCAGCTATCCAAGTCGAAACGGGATCATGCTTGGCTGGCTCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3393404‑3393646 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatatcggGCAGACACTGGCCGATATGCATGGGCTACAGGTCCATGACTGCCCGTTCGAAGTGGAGGGATTCACGGTCAAACAGCATTGGCACGCCCGCTATCATCAGGACAATGGAAATCGATGGTTGAGGGAGGTCGTTCGCGGATTGTTCCAGTGAGCCAGCCAAGCATGATCCCGTTTCGACTTGGATAGCTGATGTGATTCAGCCCATCCGCCATGGCCGCAAGCCCATCTTCGT  <  AE015451/3393657‑3393426                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCGTGACTGATCTCTGTGCTTCACGAAGATGGGCTTGCGGCCATGGCGGATGGGCTGAATCACATCAGCTATCCAAGTCGAAACGGGATCATGCTTGGCTGGCTCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGC                                                                                                                                                                                                                                                 <  1:741203/236‑1        TGATCTCTGTGCTTCACGAAGATGGGCTTGCGGCCATGGCGGATGGGCTGAATCACATCAGCTATCCAAGTCGAAACGGGATCATGCTTGGCTGGCTCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGC                                                                                                                                                                                                                                                 <  2:620279/229‑1                                                 GATGGGCTGAATCACATCAGCTATCCAAGTCGAAACGGGATCATGCTTGGCTGGCTCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATC                                                                                                                                                                                                                                            <  2:378870/193‑1                                                                                                                                                                                                 ATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCG                                                                                                                                                                                                                                           <  1:426760/50‑1                                                                                                                                                                                                 ATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCG                                                                                                                                                                                                                                           >  2:426759/1‑50                                                                                                                                                                                                                   GGCAGTCATGGACCTGTAGCCCATGCATATCGGGCAGACACTGGCCGATATGCATGGGCTACAGGTCCATGACTGCCCGTTCGAAGTGGAGGGATTCACGGTCAAACAGCATTGGCACGCCCGCTATCATCAGGACAATGGAAATCGATGGTTGAGGGAGGACGTTCGCGGATTGTTCCAGTGAGCCAGCCAAGCATGATCCCGTT                                                             >  1:93733/1‑206                                                                                                                                                                                                                        TCATGGACCTGTAGCCCATGCATATCGGGCAGACACTGGCCGATATGCATGGGCTACAGGTCCATGACTGCCCGTTCGAAGTGGAGGGATT                                                                                                                                                                           >  1:286779/1‑91                                                                                                                                                                                                                        TCATGGACCTGTAGCCCATGCATATCGGGCAGACACTGGCCGATATGCATGGGCTACAGGTCCATGACTGCCCGTTCGAAGTGGAGGGATT                                                                                                                                                                           <  2:286778/91‑1                                                                                                                                                                                                                                           GCATATCGGGCAGACACTGGCCGATATGCATGGGCTACAGGTCCATGACTGCCCGTTCGAAGTGGAGGGATTCACGGTCAAACAGCATTGGCACGCCCGCTATCATCAGGACAATGGAAATCGATGGTTGAGGGAGGTCGTTCGCGGATTGTTCCAGTGGGCCAGCAAAGCATGAGCCCGTT                                                             >  2:175605/1‑182                                                                                                                                                                                                                                                   GGCAGACACTGGCCGATATGCATGGGCTACAGGTCCATGACTGCCCGTTCGAAGTGGAGGGATTCACGGTCAAACAGCATTGGCACGCCCGCTATCATCAGGACAATGGAAATCGATGGTTGAGGGAGGTCGTTCGCGGATTGTTCCAGTGAGCCAGCCAAGCATGATCCCGTTTCGACTTGGATAGCTGATGTGATTCAGCCCATCCGCCATGGCCGCAAGCCCATCTTCGT  <  2:704410/233‑1                                                                                                                                                                                                                                                   GGCAGACACTGGCCGATATGCATGGGCTACAGGTCCATGACTGCCCGTTCGAAGTGGAGGGATTCACGGTCAAACAGCATTGGCACGCCCGCTATCATCAGGACAATGGAAATCGATGGTTGAGGGAGGTCGTTCGCGGATTGTTCCAGTGAGCCAGCCAAGCATGATCCCGTTTCGACTTGGATAGCTGATGTGATTCAGCCCATCCGCCATGGC                   >  2:490376/1‑216                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCGTGACTGATCTCTGTGCTTCACGAAGATGGGCTTGCGGCCATGGCGGATGGGCTGAATCACATCAGCTATCCAAGTCGAAACGGGATCATGCTTGGCTGGCTCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3393404‑3393646 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatatcggGCAGACACTGGCCGATATGCATGGGCTACAGGTCCATGACTGCCCGTTCGAAGTGGAGGGATTCACGGTCAAACAGCATTGGCACGCCCGCTATCATCAGGACAATGGAAATCGATGGTTGAGGGAGGTCGTTCGCGGATTGTTCCAGTGAGCCAGCCAAGCATGATCCCGTTTCGACTTGGATAGCTGATGTGATTCAGCCCATCCGCCATGGCCGCAAGCCCATCTTCGT  <  AE015451/3393657‑3393426

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.