New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3393646	26 (0.650)	3 (0.080)	3/318	NT	10.8%	coding (761/900 nt)	PP_2997	CnmA
	?	AE015451	= 3393657	25 (0.660)					coding (750/900 nt)	PP_2997	CnmA

ATCTCTGTGCTTCACGAAGATGGGCTTGCGGCCATGGCGGATGGGCTGAATCACATCAGCTATCCAAGTCGAAACGGGATCATGCTTGGCTGGCTCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCATCGCCCAGGCGCGGATGCTGCGGGTT  >  AE015451/3393413‑3393878                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                         aTCTCTGTGCTTCACGAAGATGGGCTTGCGGCCATGGCGGATGGGCTGAATCACATCAGCTATCCAAGTCGAAACGGGATCATGCTTGGCTGGCTCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGcc                                                                                                                                                                                                                                        <  1:129223/236‑1 (MQ=255)              aCGAAGATGGGCTTGCGGCCATGGCGGATGGGCTGAATCACATCAGCTATCCAAGTCGAAACGGGATCATGCTTGGCTGGCTCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCc                                                                                                                                                                                                                              <  2:704410‑M2/233‑2 (MQ=255)                       ggCTTGCGGCCATGGCGGATGGGCTGAATCACATCAGCTATCCAAGTCGAAACGGGATCATGCTTGGCTGGCTCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCcgcg                                                                                                                                                                                                                  <  1:671201/236‑1 (MQ=255)                          ttGCGGCCATGGCGGATGGGCTGAATCACATCAGCTATCCAAGTCGAAACGGGATCATGCTTGGCTGGCTCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGc                                                                                                                                                                                                                <  1:462585/235‑1 (MQ=255)                           tGCGGCCATGGCGGATGGGCTGAATCACATCAGCTATCCAAGTCGAAACGGGATCATGCTTGGCTGGCTCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCaa                                                                                                                                                                                                              <  1:704411/236‑1 (MQ=255)                               gCCATGGCGGATGGGCTGAATCACATCAGCTATCCAAGTCGAAACGGGATCATGCTTGGCTGGCTCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCc                                                                                                                                                                                                                              >  2:490376‑M2/1‑215 (MQ=255)                                     gCGGATGGGCTGAATCACATCAGCTATCCAAGTCGAAACGGGATCATGCTTGGCTGGCTCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGt                                                                                                                                                                                                    >  1:519990/1‑236 (MQ=255)                                                              aTCCAAGTCGAAACGGGATCATGCTTGGCTGGCTCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCgg                                                                                                                                                                                                                 >  2:179619/1‑198 (MQ=255)                                                              aTCCAAGTCGAAACGGGATCATGCTTGGCTGGCTCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTACCCCAGGCATATCGGCCa                                                                                                                                                                                                                                       >  1:256154/1‑176 (MQ=255)                                                                         aaCGGGCTCATGCTTTGCTGGCCCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCccgatatgc                                                                                                                                                                                                                      >  2:175605‑M2/1‑173 (MQ=255)                                                                         aaCGGGATCATGCTTGGCTGGCTCACTGGAACAATCCGCGAACGTCCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCccgatatgcatgggctacaggtccatgactgcc                                                                                                                                                                                              >  1:93733‑M2/1‑173 (MQ=255)                                                                                           tggctCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGACCGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCa                                                                                                                                                                                                      >  2:250180/1‑180 (MQ=255)                                                                                           tggctCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGc                                                                                                                                              >  1:97284/1‑236 (MQ=255)                                                                                                 aCTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCcgcg                                                                                                                                                                                                                  <  1:433139/162‑1 (MQ=255)                                                                                                 aCTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCcgcg                                                                                                                                                                                                                  >  2:433138/1‑162 (MQ=255)                                                                                                                                   tCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCa                                                                                                                                                      >  2:421540/1‑188 (MQ=255)                                                                                                                                     gATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATccccg                                                                                                                        >  1:665970/1‑214 (MQ=255)                                                                                                                                       tttCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCgcgc                                                                                                                 >  2:304498/1‑221 (MQ=255)                                                                                                                                           cATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTGTGTCCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAg                                                                                                                                                                                          <  2:46567/144‑1 (MQ=255)                                                                                                                                                             gggCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGTCCGATATGCCGCGGCAACGCGCCCAGTAGGTCGGt                                                                                                                                                                                            >  1:155113/1‑124 (MQ=255)                                                                                                                                                             gggCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCg                                                                                     >  2:476007/1‑227 (MQ=255)                                                                                                                                                             gggCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGGGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGGAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGcc                                                                                                                      >  1:211900/1‑194 (MQ=255)                                                                                                                                                                                gACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTgg                                                                        >  1:425186/1‑220 (MQ=255)                                                                                                                                                                                       aaTCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCccgatatgcatgggctacaggtccatga                                                                                                                                                                                                   >  1:286779‑M2/1‑63 (MQ=255)                                                                                                                                                                                       aaTCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCccgatatgcatgggctacaggtccatga                                                                                                                                                                                                   <  2:286778‑M2/91‑29 (MQ=255)                                                                                                                                                                                       aaTCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGccc                                                   >  1:556217/1‑235 (MQ=255)                                                                                                                                                                                                      aaCGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGa                                                                                                                              <  2:69425/145‑1 (MQ=255)                                                                                                                                                                                                       aCGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGGAGTCCCGATTATCTTCCCCAGCCCg                                                                                                                                                                   >  2:104302/1‑107 (MQ=255)                                                                                                                                                                                                          ggCAGTCATGGACCTGTAGCCCATGCATATCGGgcagacactggccgatatgcatgggctacaggtccatgactgcccgttcgaagtggagggattcacggtcaaacagcattggcacgcccgctatcatcaggacaatggaaatcgatggttgagggaggacgttcgcggattgttccagtgagccagccaagcatgatcccgtt                                                             >  1:93733‑M1/1‑33 (MQ=255)                                                                                                                                                                                                               tCATGGACCTGTAGCCCATGCATATCGGgcagacactggccgatatgcatgggctacaggtccatgactgcccgttcgaagtggagggatt                                                                                                                                                                           <  2:286778‑M1/91‑64 (MQ=255)                                                                                                                                                                                                               tCATGGACCTGTAGCCCATGCATATCGGgcagacactggccgatatgcatgggctacaggtccatgactgcccgttcgaagtggagggatt                                                                                                                                                                           >  1:286779‑M1/1‑28 (MQ=255)                                                                                                                                                                                                                            gCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTccc                                                                                                                                                                                      >  2:2618/1‑67 (MQ=255)                                                                                                                                                                                                                            gCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCgg                                                                                    >  1:479224/1‑165 (MQ=255)                                                                                                                                                                                                                            gCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCgg                                                                                    <  2:479223/165‑1 (MQ=255)                                                                                                                                                                                                                            gCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCg                                                  >  2:652331/1‑199 (MQ=255)                                                                                                                                                                                                                                  gCATATCGGgcagacactggccgatatgcatgggctacaggtccatgactgcccgttcgaagtggagggattcacggtcaaacagcattggcacgcccgctatcatcaggacaatggaaatcgatggttgagggaggtcgttcgcggattgttccagtgggccagcaaagcatgagcccgtt                                                             >  2:175605‑M1/1‑9 (MQ=255)                                                                                                                                                                                                                                    atatCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGa                                                 >  2:289046/1‑192 (MQ=255)                                                                                                                                                                                                                                    atatCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATAc                                              >  2:478789/1‑195 (MQ=255)                                                                                                                                                                                                                                          ggcagacactggccgatatgcatgggctacaggtccatgactgcccgttcgaagtggagggattcacggtcaaacagcattggcacgcccgctatcatcaggacaatggaaatcgatggttgagggaggtcgttcgcggattgttccagtgagccagccaagcatgatcccgtttcgacttggatagctgatgtgattcagcccatccgccatggccgcaagcccatcttcgt  <  2:704410‑M1/233‑233 (MQ=255)                                                                                                                                                                                                                                          ggcagacactggccgatatgcatgggctacaggtccatgactgcccgttcgaagtggagggattcacggtcaaacagcattggcacgcccgctatcatcaggacaatggaaatcgatggttgagggaggtcgttcgcggattgttccagtgagccagccaagcatgatcccgtttcgacttggatagctgatgtgattcagcccatccgccatggc                   >  2:490376‑M1/1‑1 (MQ=255)                                                                                                                                                                                                                                          gCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCATCGCCCAGgcgc                >  1:364955/1‑219 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                         ATCTCTGTGCTTCACGAAGATGGGCTTGCGGCCATGGCGGATGGGCTGAATCACATCAGCTATCCAAGTCGAAACGGGATCATGCTTGGCTGGCTCACTGGAACAATCCGCGAACGACCTCCCTCAACCATCGATTTCCATTGTCCTGATGATAGCGGGCGTGCCAATGCTGTTTGACCGTGAATCCCTCCACTTCGAACGGGCAGTCATGGACCTGTAGCCCATGCATATCGGCCAGTGTCTGCCCGATATGCCGCGGCAAGGTGCCCAGTAGGTCGGTAGTCCCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCATCGCCCAGGCGCGGATGCTGCGGGTT  >  AE015451/3393413‑3393878

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.