New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 3409928 = | 37 (0.930) | 7 (0.180) | 7/326 | NT | 14.6% | intergenic (‑494/‑42) | PP_3022/PP_3024 | Transcriptional regulator, AraC family/conserved protein of unknown function |
? | AE015451 | = 3450711 | 46 (1.190) | intergenic (‑125/+258) | PP_5558/PP_3069 | putative transcriptional xre family of phage origin/Outer membrane autotransporter |
TTTTGCAATGCGCTTATGCCGAAGGTAGTAGTCTTTTTTTAAAAGCTTCACATGATATCCATTCAATGCGCAGGTGATTTGTAAGTACGACAAGCGTGGCAATTTGCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGGGTTGATACCAATTTACCCTGAAGCTAGAGTTTATATTGTCAGTCGCTAGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/3410119‑3409928 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggttACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCTTGATCCGTATACATTGCTTAAGATGGCTTTCTCGCTATACTGTTCATGC < AE015451/3450711‑3450604 TTTTGCAATGCGCTTATGCCGAAGGTAGTAGTCTTTTTTTAAAAGCTTCACATGATATCCATTCAATGCGCAGGTGATTTGTAAGTACGACAAGCGTGGCAATTTGCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGGGTTGATACCAATTTACCCTGAAGCTAGAGTTTATATTGTCAGTCGCTAGGGTTACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTG > 1:295773/1‑236 AGGTAGTAGTCTTTTTTTAAAAGCTTCACATGATATCCATTCAATGCGCAGGTGATTTGTAAGTACGACAAGCGTGGCAATTTGCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGGGTTGATACCAATTTACCCTGAAGCTAGAGTTTATATTGTCAGTCGCTAGGGTTACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGC < 2:583930/227‑1 GGTAGTAGTCTTTTTTTAAAAGCTTCACATGATATCCATTCAATGCGCAGGTGATTTGTAAGTACGACAAGCGTGGCAATTTGCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGGGTTGATACCAATTTACCCTGAAGCTAGAGTTTATATTGTCAGTCGCTAGGGTTACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCT < 2:155920/228‑1 CATTCAATGCGCAGGTGATTTGTAAGTACGACAAGCGTGGCAATTTGCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGGGTTGATACCAATTTACCCTGAAGCTAGAGTTTATATTGTCAGTCGCTAGGGTTACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCTTGATCCGTATACATTGCTTAAGATGGCTTTCTCGCTATACTGTT < 1:106200/236‑1 CGCAGGTGATTTGTAAGTACGACAAGCGTGGCAATTTGCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGGGTTGATACCAATTTACCCTGAAGCTAGAGTTTATATTGTCAGTCGCTAGGGTTACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCTTGATCCGTATACATTGCTTAAGATGGCTTTCTCGCTATACTGTTCATGC < 2:295772/232‑1 TGAAGCTAGAGTTTATATTGTCAGTCGCTAGGGTTACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCTTGATCCGTATACATTGCTTAAG > 1:608656/1‑116 TGAAGCTAGAGTTTATATTGTCAGTCGCTAGGGTTACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCTTGATCCGTATACATTGCTTAAG < 2:608655/116‑1 TTTTGCAATGCGCTTATGCCGAAGGTAGTAGTCTTTTTTTAAAAGCTTCACATGATATCCATTCAATGCGCAGGTGATTTGTAAGTACGACAAGCGTGGCAATTTGCCTCTGTTCGCCTGCTGAGTCAATGCATGGAGGGTTGATACCAATTTACCCTGAAGCTAGAGTTTATATTGTCAGTCGCTAGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/3410119‑3409928 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggttACCTAGCGACTGATAATATAATTTTTAGAATAACCACCCTCCTGCCCCTAAGCAGGCCTTGATCCGTATACATTGCTTAAGATGGCTTTCTCGCTATACTGTTCATGC < AE015451/3450711‑3450604 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |