New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3643464 =	32 (0.800)	3 (0.080)	3/316	NT	8.9%	coding (583/804 nt)	PP_3210	ABC transporter, permease protein
	?	AE015451	3643546 =	31 (0.820)					coding (501/804 nt)	PP_3210	ABC transporter, permease protein

ATCGCGCCGCTGATCATCATCTGGTGCAGCGACACGACCTTGGCGTTGGTGATCTGCGCCACGCTGGTGGCGATCTTCCCGATCATCGCCAACACCGTCCTGGGCCTGCGCAGCGTCAACCCTGGCCTGCTCAACCTGTTCCATCTGAACCGCGCCAGCCGCTGGCAAGTGCTGTTGCGCCTGCGCATTCCCAGCGCCTTACCGTGCTTTTTCGCTGGCCTGCGCATCGCCAGCGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3643701‑3643464 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagcggctGGCGCGGTTCAGATGGAACAGGTTGAGCAGGCCAGGGTTGACGCTGCGCAGGCCCAGGACGGTGTTGGCGATGATCGGGAAGATCGCCACCAGCGTGGCGCAGATCACCAACGCCAAGGTCGTGTCGCTGCACCAGATGATGATCAGCGGCGCGATGGCCACCACCGGCGTTACCTGCAGCA  >  AE015451/3643546‑3643727                                                                                                                                                                                                                                                                                                                                                                                                                                      ATCGCGCCGCTGATCATCATCTGGTGCAGCGACACGACCTTGGCGTTGGTGATCTGCGCCACGCTGGTGGCGATCTTCCCGATCATCGACAACACCGTCCTGGGCCTGCGCAGCGTCAACCCTGGCCTGCTCAACCTGTTCCATCTGAACCGCGCCAGCCGCTGGCAAGTGCTGTTGCGCCTGCGCATTCCCAGCGCCTTACCGTGCTTTTTCGCTGGCCTGCGCATCGCCAGCG                                                                                                                                                                                           >  1:710030/1‑235                                                   GATCTGCGCCACGCTGGTGGCGATCTTCCCGATCATCGCCAACACCGTCCTGGGCCTGCGCAGCGTCAACCCTGGCCTGCTCAACCTGTTCCATCTGAACCGCGCCAGCCGCTGGCAAGTGCTGTTGCGCCTGCGCATTCCCAGCGCCTTACCGTGCTTTTTCGCTGGCCTGCGCATCGCCAGCGGC                                                                                                                                                                                         >  2:368702/1‑187                                                    ATCTGCGCCACGCTGGTGGCGATCTTCCCGATCATCGCCAACACCGTCCTGGGCCTGCGCAGCGTCAACCCTGGCCTGCTCAACCTGTTCCATCTGAACCGCGCCAGCCGCTGGCAAGTGCTGTTGCGCCTGCGCATTCCCAGCGCCTTACCGTGCTTTTTCGCTGGCCTGCGCATCGCCAGCGGCT                                                                                                                                                                                        >  2:49118/1‑187                                                                             TCCCGATCATCGCCACCCCCGTCCTGGGCCTGCGCAGCGTCAACCCTGGCCTGCTCACCCTGTTCCATCTGAACCGCGCCAGCCGCTGGCAAGTGCTGTTGCGCCTGCGCATTCCCAGCGCCTTACCGTGCTTTTTCGCTGGCCTGCGCATCGCCAGCG                                                                                                                                                                                           <  2:109966/159‑1                                                                                         CCAACACCGTCCTGGGCCTGCGCAGCGTCAACCCTGGCCTGCTCAACCTGTTCCATCTGAACCGCGCCAGCCGCTGGCAAGTGCTGTTGCGCCTGCGCATTCCCAGCGCCTTACCGTGCTTTTTCGCTGGCCTGCGCATCGCCAGCGGCT                                                                                                                                                                                        >  2:621364/1‑150                                                                                                          aTGCGCAGCGTCAACCCTGGCCTGCTCAACCTGTTCCATCTGAACCGCGCCAGCCGCTGGCAAGTGCTGTTGCGCCTGCGCATTCCCAGCGCCTTACCGTGCTTTTTCGCTGGCCTGCGCATCGCCAGCG                                                                                                                                                                                           <  1:40765/129‑1                                                                                                                                                                            CTGTTGCGCCTGCGCATTCCCAGCGCCTTACCGTGCTTTTTCGCTGGCCTGCGCATCGCCAGCGGCTGGCGCGGTTCAGATGGAACAGGTTGAGCAGGCCAGGGTTGACGCTGCGCAGGCCCAGGACGGTGTTGGCGATGATCGGGAAGATCGCCACCAGCGTGGCGCAGATCACCAACGCCAAGGTCGTGTCGCTGCACCAGATGATGATCAGCGGCGCGATGGCCACCACCGG                >  1:562622/1‑235                                                                                                                                                                                         GCATTCCCAGCGCCTTACCGTGCTTTTCCGCTGGCCTGCGCATCGCCAGCGGCTGGCGCGGTTCAGATGGAACAGGTTGAGCAGGCCAGGGTTGACGCTGCGCAG                                                                                                                                     <  2:624390/105‑1                                                                                                                                                                                                                        TGGCCTGCGCATCGCCAGCGGCTGGCGCGGTTCAGATGGAACAGGTTGAGCAGGCCAGGGTTGACGCTGCGCAGGCCCAGGACGGTGTTGGCGATGATCGGGAAGATCGCCACCAGCGTGGCGCAGATCACCAACGCCAAGGTCGTGTCGCTGCACCAGATGATGATCAGCGGCGCGATGGCCACCACCGGCGTTACCTGCAGCA  <  2:562621/205‑1                                                                                                                                                                                                                                        AGCGGCTGGCGCGGTTCAGATGGAACAGGTTGAGCAGGCCAGGGTTGACGCTGCGCAGGCCCAGGACGGTGTTGGCGATGATCGGGAAGATCGCCACCAGCGTGGCGCAGATCACCAACGCCAAGGTCGTGTCGCTGCACCAGATGATGATCAGCGGCGCGATGGCCACCA                    >  1:605794/1‑171                                                                                                                                                                                                                                        AGCGGCTGGCGCGGTTCAGATGGAACAGGTTGAGCAGGCCAGGGTTGACGCTGCGCAGGCCCAGGACGGTGTTGGCGATGATCGGGAAGATCGCCACCAGCGTGGCGCAGATCACCAACGCCAAGGTCGTGTCGCTGCACCAGATGATGATCAGCGGCGCGATGGCCACCA                    <  2:605793/171‑1                                                                                                                                                                                                                                                                                                                                                                                                                                      ATCGCGCCGCTGATCATCATCTGGTGCAGCGACACGACCTTGGCGTTGGTGATCTGCGCCACGCTGGTGGCGATCTTCCCGATCATCGCCAACACCGTCCTGGGCCTGCGCAGCGTCAACCCTGGCCTGCTCAACCTGTTCCATCTGAACCGCGCCAGCCGCTGGCAAGTGCTGTTGCGCCTGCGCATTCCCAGCGCCTTACCGTGCTTTTTCGCTGGCCTGCGCATCGCCAGCGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3643701‑3643464 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagcggctGGCGCGGTTCAGATGGAACAGGTTGAGCAGGCCAGGGTTGACGCTGCGCAGGCCCAGGACGGTGTTGGCGATGATCGGGAAGATCGCCACCAGCGTGGCGCAGATCACCAACGCCAAGGTCGTGTCGCTGCACCAGATGATGATCAGCGGCGCGATGGCCACCACCGGCGTTACCTGCAGCA  >  AE015451/3643546‑3643727

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.