New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4001760 =	34 (0.850)	3 (0.080)	3/300	NT	9.6%	intergenic (+77/‑57)	dmoA‑II/allE	dimethyl‑sulfide monooxygenase/putative S‑ureidoglycine aminohydrolase
	?	AE015451	4001778 =	26 (0.730)					intergenic (+95/‑39)	dmoA‑II/allE	dimethyl‑sulfide monooxygenase/putative S‑ureidoglycine aminohydrolase

ACGGTCAGTCAGCAGCTCGGTTTGAGCCGGGTGCCCACCGTGGGGGGCGAAGTATGAATGGTTCGACATGGACGATCTCGACTTGTTGTTCTCTCCCCATGCCTTGAACCGCACCGGCCGGTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4001885‑4001760 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcaccggccggtgcggTTCAAGGCATGGGGAGAGAACAACAAGTCGAGATCGTCCATGTCGAACCATTCATACTTCGCCCCCCACGGTGGGCACCCGGCTCAAACCGAGCTGCTGACTGACCGT  >  AE015451/4001778‑4001885                                                                                                                                                                                                                                            ACGGTCAGTCAGCAGCTCGGTTTGAGCCGGGTGCCCACCGTGGGGGGCGAAGTATGAATGGTTCGACATGGACGATCTCGACTTGTTGTTCTCTCCCCATGCCTTGAACCGCACCGGCCGG                                                                                                                   <  2:495427/121‑1                                                                 GACATGGACGATCTCGACTTGTTGTTCTCTCCCCATGCCTTGAACCGCACCGGCCGGTGCGGTTCAAGGCATGGGGAGAGAACAACAAGTCGAGAACGTCCATGTCGAACCATTC                                                         >  2:379410/1‑115                                                                  ACATGGACGATCTCGACTTGTTGTTCTCTCCCCATGCCTTGAACCGCACCGGCCGGTGCGGTTCAAGGCATGGGGAGAGAACAACAAGTCGAGATCGTCCATGTCGAACCATTCATACTTCGCCCCCCACGGTGGGCACCCGGCTCCAACCGA                  >  2:202463/1‑153                                                                        gCGATCTCGACTTGTTGTTCTCTCCCCATGCCTTGAACCGCCCCGGCCGGTGCGGTTCAAGGCATGGGGAGAGAACAACAAGTCG                                                                                <  1:186707/84‑1                                                                                                                  CCGGCCGGTGCGGTTCAAGGCATGGGGAGAGAACAACAAGTCGAGATCGTCCATGTCGAACCATTCATACTTCGCCCCCCACGGTGGGCACCCGGCTCAAACCGAGCTGCTGACTGACCGT  <  1:495428/121‑1                                                                                                                                                                                                                                            ACGGTCAGTCAGCAGCTCGGTTTGAGCCGGGTGCCCACCGTGGGGGGCGAAGTATGAATGGTTCGACATGGACGATCTCGACTTGTTGTTCTCTCCCCATGCCTTGAACCGCACCGGCCGGTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4001885‑4001760 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcaccggccggtgcggTTCAAGGCATGGGGAGAGAACAACAAGTCGAGATCGTCCATGTCGAACCATTCATACTTCGCCCCCCACGGTGGGCACCCGGCTCAAACCGAGCTGCTGACTGACCGT  >  AE015451/4001778‑4001885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.