New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4240151 =	41 (1.030)	4 (0.110)	3/312	NT	9.7%	coding (139/900 nt)	PP_3717	Transcriptional regulator, LuxR family
	?	AE015451	4240192 =	36 (0.970)					coding (98/900 nt)	PP_3717	Transcriptional regulator, LuxR family

CGTTGATCATCACCCATGCGCAGGTGGACGAGATCGTCGAGACCCTGCGCCAGTGCATCATTGAGACCGCGCGTGAACTCACGGCGCTTGGCCTGTACCAAGGCCGATGAACCTGGCGCAAAGGGCTGTGCGCGGGCGTGCCTGGCAGGCTAGACTGCCGGGCATGACCCAGGCCTCTCCCGATACCCCGCTTACCCTCACAATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTGCAGCGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4240395‑4240151 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcagcgcgcccATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCTGGGTCATGCCCGGCAGTCTAGCCTGCCAGGCACGCCCGCGCACAGCCCTTTGCGCCAGGTTCATCGGCCTTGGTACAGGCCAAGCGCCGTGAGTTCACGCGCGGTCTCAATGATGCACTGGCGCAGGGTCTCGACGATCTCGTCCACCTGCGCATGGGTGATGATCAACGGTGGCGACATCAC  >  AE015451/4240192‑4240408                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CGTTGATCATCACCCATGCGCAGGTGGACGAGATCGTCGAGACCCTGCGCCAGTGCATCATTGAGACCGCGCGTGAACTCACGGCGCTTGGCCTGTACCAAGGCCGATGAACCTGGCGCAAAGGGCTGTGCGCGGGCGTGCCTGGCAGGCTAGACTGCCGGGCATGACCCAGGCCTCTCCCGATACCCCGCTTACCCTCACAATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTGC                                                                                                                                                                                                                                    <  1:574565/236‑1          TCACCCATGCGCAGGTGGACGAGATCGTCGAGACCCTGCGCCAGTGCATCATTGAGACCGCGCGTGAACTCACGGCGCTTGGCCTGTACCAAGGCCGATGAACCTGGCGCAAAGGGCTGTGCGCGGGCGTGCCTGGCAGGCTAGACTGCCGGGCATGACCCAGGCCTCTCCCGATACCCCGCTTACCCTCACAATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTGCAGCGCG                                                                                                                                                                                                                              <  2:517878/233‑1                                                 GCCAGTGCATCATTGAGACCGCGCGTGAACTCACGGCGCTTGGCCTGTACCAAGGCCGATGAACCTGGCGCAAAGGGCTGTGCGCGGGCGTGCCTGGCAGGCTAGACTGCCGGGCATGACCCAGGCCTCTCCCGATACCCCGCTTACCCTCACAATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTG                                                                                                                                                                                                                                     <  1:537326/187‑1                                                 GCCAGTGCATCATTGAGACCGCGCGTGAACTCACGGCGCTTGGCCTGTACCAAGGCCGATGAACCTGGCGCAAAGGGCTGTGCGCGGGCGTGCCTGGCAGGCTAGACTGCCGGGCATGACCCAGGCCTCTCCCGATACCCCGCTTACCCTCACAATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTG                                                                                                                                                                                                                                     >  2:537325/1‑187                                                           CATTGAGACCGCGCGTGAACTCACGGCGCTTGGCCTGTACCAAGGCCGATGAACCTGGCGCAAAGGGCTGTGCGCGGGCGTGCCTGGCAGGCTAGACTGCCGGGCATGACCCAGGCCTCTCCCGATACCCCGCTTACCCTCACAATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTGCAGCGCGC                                                                                                                                                                                                                             <  2:315725/185‑1                                                                      gGCGTGAACTCACGGCGCTTGGCCTGTACCAAGGCCGATGAACCTGGCGCAAAGGGCTGTGCGCGGGCGTGCCTGGCAGGCTAGACTGCCGGGCATGACCCAGGCCTCTCCCGATACCCCGCTTACCCTCACAATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTGCAGCGCGCCCATTGTGAGGGTAAGCGGGGTATCG                                                                                                                                                                                                   <  1:48437/199‑1                                                                         GTGAACTCACGGCGCTTGGCCTGTACCAAGGCCGATGAACCTGGCGCAAAGGGCTGTGCGCGGGCGTGCCTGGCAGGCTAGACTGCCGGGCATGACCCAGGCCTCTCCCGATACCCCGCTTACCCTCACAATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTGCAGCGCGC                                                                                                                                                                                                                             >  1:658918/1‑171                                                                                                  CCAAGGCCGATGAACCTGGCGCAAAGGGCTGTGCGCGGGCGTGCCTGGCAGGCTAGACTGCCGGGCATGACCCAGGCCTCTCCCGATACCCCGCTTACCCTCACAATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTGCA                                                                                                                                                                                                                                   <  2:664809/140‑1                                                                                                  CCAAGGCCGATGAACCTGGCGCAAAGGGCTGTGCGCGGGCGTGCCTGGCAGGCTAGACTGCCGGGCATGACCCAGGCCTCTCCCGATACCCCGCTTACCCTCACAATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTGCA                                                                                                                                                                                                                                   >  1:664810/1‑140                                                                                                                                              CTGGCAGGCTAGACTGCCGGGCATGACCCAGGCCTCTCCCGATACCCCGCTTACCCTCACAATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTGCAGCGCGCCCATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCT                                                                                                                                                                                         >  1:609505/1‑138                                                                                                                                              CTGGCAGGCTAGACTGCCGGGCATGACCCAGGCCTCTCCCGATACCCCGCTTACCCTCACAATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTGCAGCGCGCCCATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCT                                                                                                                                                                                         <  2:609504/138‑1                                                                                                                                              CTGGCAGGCTAGACTGCCGGGCATGACCCAGGCCTCTCCCGATACCCCGCTTACCCTCACAATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTG                                                                                                                                                                                                                                     >  1:421455/1‑94                                                                                                                                              CTGGCAGGCTAGACTGCCGGGCATGACCCAGGCCTCTCCCGATACCCCGCTTACCCTCACAATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTG                                                                                                                                                                                                                                     <  2:421454/94‑1                                                                                                                                                                                                                          cgGTGGCACGTGGCGTGGCAGCGCGCCCATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCT                                                                                                                                                                                         <  2:395432/60‑1                                                                                                                                                                                                                                            CAGCGCGCCCATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCTGGGTCATGCCCGGCAGTCTAGCCTGCCAGGCACGCCCGCGCACAGCCCTTTGCGCCAGGTTCATCGGCCTTGGTACAGGCCAAGCGCCGTGAGTTCAC                                                                                       <  1:36070/142‑1                                                                                                                                                                                                                                              GCGCGCCCATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCTGGGTCATGCCCGGCAGTCTAGCCTGCCAGGCACGCCCGCGCACAGCCCTTTGCGCCAGGTTCATCGGCCTTGGTACAGGCCAAGCGCCGTGAGTTCACGCGCGG                                                                                 >  2:334414/1‑146                                                                                                                                                                                                                                              GCGCGCCCATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCTGGGTCATGCCCGGCAGTCTAGCCTGCCAGGCACGCCCGCGCACAGCCCTTTGCGCCAGGTTCATCGGCCTTGGTACAGGCCAAGCGCCGTGAGTTCACGCGCGG                                                                                 <  1:334415/146‑1                                                                                                                                                                                                                                               CGCGCCCATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCTGGGTCATGCCCGGCAGTCTAGCCTGCCAGGCACGCCCGCGCACAGCCCTTTGCGCCAGGTTCATTGGCCTTGGTACAGGCCAAGCGCCGTGAGTTCACGCGCGGTCTCAATGATGCAC                                                                   >  1:704051/1‑159                                                                                                                                                                                                                                               CGCGCCCATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCTGGGTCATGCCCGGCAGTCTAGCCTGCCAGGCACGCCCGCGCACAGCCCTTTGCGCCAGGTTCATCGGCCTTGGTACAGGCCAAGCGCCGTGAGTTCACGCGCGGTCTCAATGATGCACTGGCGCAGGGTCTCGACGATCTCGTCCACCTGCGCATGGGTGATGATCAACGGTGGCGACATCAC  <  2:686569/224‑1                                                                                                                                                                                                                                                    CCATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCTGGGCCATGCCC                                                                                                                                                                              >  2:598411/1‑47                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CGTTGATCATCACCCATGCGCAGGTGGACGAGATCGTCGAGACCCTGCGCCAGTGCATCATTGAGACCGCGCGTGAACTCACGGCGCTTGGCCTGTACCAAGGCCGATGAACCTGGCGCAAAGGGCTGTGCGCGGGCGTGCCTGGCAGGCTAGACTGCCGGGCATGACCCAGGCCTCTCCCGATACCCCGCTTACCCTCACAATGGGCGCGCTGCAGCAGTGGCACGTGGCGTTGCAGCGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4240395‑4240151 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcagcgcgcccATTGTGAGGGTAAGCGGGGTATCGGGAGAGGCCTGGGTCATGCCCGGCAGTCTAGCCTGCCAGGCACGCCCGCGCACAGCCCTTTGCGCCAGGTTCATCGGCCTTGGTACAGGCCAAGCGCCGTGAGTTCACGCGCGGTCTCAATGATGCACTGGCGCAGGGTCTCGACGATCTCGTCCACCTGCGCATGGGTGATGATCAACGGTGGCGACATCAC  >  AE015451/4240192‑4240408

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.