New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4375240 =	49 (1.230)	3 (0.080)	3/312	NT	6.2%	coding (60/264 nt)	PP_3850	conserved protein of unknown function
	?	AE015451	4375362 =	46 (1.240)					coding (174/258 nt)	PP_5637	conserved protein of unknown function

TGGCGACCATCACAGCGAGCCTCTGGGTCGAGTCGCGACCCAGGCCTGGGTGTTTAACCCTACGCCTGGGCCCGACATTATCCCCCGGCTGCACGATGCGAAGGTCAACGGCATGGCCCAGCTCGGCATCAACATCAACGGGGTAGAAGAGGTCGAAGGCGTGCTATATGCGCAGTCGTGGTGGTGCAGGGCAGAATGATGGCCGGGGTTCCGCAGGCTTGGCTGGCCGAGCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4375476‑4375240 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgagctgggcCATGCCGTTGACCTTCGCATCGTGCAGCCGGGGGATAATGTCGGGCCCAGGCGTAGGGTTAAACACCCAGGCCTGGGTCGCGACTCGACCCAGAGGCTCGCTGTGATGGTCGCCAATGTGGACGTCCGCGCGGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGAT  >  AE015451/4375362‑4375595                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGGCGACCATCACAGCGAGCCTCTGGGTCGAGTCGCGACCCAGGCCTGGGTGTTTAACCCTACGCCTGGGCCCGACATTATCCCCCGGCTGCACGATGCGAAGGTCAACGGCATGGCCCAGCTCGGCATCAACATCAACGGGGTAGAAGAGGTCGAAGGCGTGCTATATGCGCAGTCGTGGTGGTGCAGGGCAGAATGATGGCCGGGGTTCCGCAGGCTTGGCTGGCCGAGCTGGG                                                                                                                                                                                                                                             <  1:335353/236‑1   GCGACCATCACAGCGAGCCTCTGGGTCGAGTCGCGACCCAGGCCTGGGTGTTTAACCCTACGCCTGGGCCCGACATTATCCCCCGGCTGCACGATGCGAAGGTCAACGGCATGGCCCAGCTCGGCATCAACATCAACGGGGTAGAAGAGGTCGAAGGCGTGCTATATGCGCAGTCGTGGTGGTGCAGGGCAGAATGATGGCCGGGGTTCCGCAGGCTTGGCTGGCCGAGCTGGGC                                                                                                                                                                                                                                            <  2:697835/235‑1                 GAGCCTCTGGGTCGAGTCGCGACCCAGGCCTGGGTGTTTAACCCTACGCCTGGGCCCGACATTATCCCCCGGCTGCACGATGCGAAGGTCAACGGCATGGCCCAGCTCGGCATCAACATCAACGGGGTAGAAGAGGTCGAAGGCGTGCTATATGCGCAGTCGTGGTGGTGCAGGGCAGAATGATGGCCGGGGTTCCGCAGGCTTGGCTGGCCGAGCTGGGCC                                                                                                                                                                                                                                           <  1:346145/222‑1                                                                                                                                                           GAAGGCGTGCTATATGCGCAGTCGTGGTGGTGCAGGGCAGAATGATGGCCGGGGTGCCGCAGGCTTGGCTGGCCG                                                                                                                                                                                                                                                    >  1:131831/1‑75                                                                                                                                                                                  GTGGTGGTGCAGGGCAGAATGCTGGCCGGGGTTCCGCAGGCTTGGCTGGCCGAGCTGGGCCATGCCGTTGACCTTCGCATCGTGCAGCCGGGGGATAATGTCGGGCCCAGGCGT                                                                                                                                                                                      <  1:553597/114‑1                                                                                                                                                                                                   AATGATGGCCGGGGTTCCGCAGGCTTGGCTGGCCGAGCTGGGCCATGCCGTTGACCTTCGCATCGTGCAGCCGGGGGATAATGTCGGGCCCAGGCGTAGGGTTAAACACCCAGGCCTGGGTTGCGACTCGAACCAG                                                                                                                                               >  2:191469/1‑136                                                                                                                                                                                                      GATGGCCGGGGTTCCGCAGGCTTGGCTGGCCGAGCTGGGCCATGCCGTTGACCTTCGCATCGTGCAGCCGGGGGATAATGTCGGGCCCAGGCGTAGGGTTAAACACCCAGGCCTGGGTGGCGACgc                                                                                                                                                      >  2:201318/1‑124                                                                                                                                                                                                                                    CGAGCTGGGCCATGCCGTTGACCTTCGCATCGTGCAGCCGAGGGATAATGTCGGGCCCAGGAGTAGGGTTAAACACCCAGGCCTGGGTCGCGACTCGACCCAGAGGCTCGCTGTGATGGTCGCCAATGTGGACGTCCGCGCGGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCCTGCTCGCGGCGTCGAA                                          >  2:721532/1‑204                                                                                                                                                                                                                                        CTGGGCCATGCCGGTGACCTTCGCATCGTGCAGCCGGGGGATAATGTCGGGCCCAGGCGTAGGGTTAAACACCCAGGCCTGGGTCGCGACTCGACCCAGAGGCTCGCTGTGATGGTCGCCAATGTGGACGTCCGCGCGGAGGGGCTGGACTTTCCGTAGGCGG                                                                               <  2:185114/163‑1                                                                                                                                                                                                                                          GGGCCATGCCGTTGACCTTCGCATCGTGCAGCCGGGGGATAATGTCGGGCCCAGGCGTAGGGTTAAACACCCAGGCCTGGGTCGCGACTCGACCCAGAGGCTCGCTGTGATGGTCGCCAATGTGGACGTCCGCGCGGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTA         <  2:662422/231‑1                                                                                                                                                                                                                                           GGCCATGCCGTTGACCTTCGCATCGTGCAGCCGGGGGATAATGTCGGGCCCAGGCGTAGGGTTAAACACCCAGGCCTGGGTCGCGACTCGACCCAGAGGCTCGCTGTGATGGTCGCCAATGTGGACGTCCGCGCGGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAG    <  1:129356/235‑1                                                                                                                                                                                                                                           GGCCATGCCGTTGACCTTCGCATCGTGCAGCCGGGGGATAATGTCGGGCCCAGGCGTAGGGTTAAACACCCAGGCCTGGGTCGCGACTCGACCCAGAGGCTCGCTGTGATGGTCGCCAATGTGGACGTCCGCGCGGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAG    <  1:513740/235‑1                                                                                                                                                                                                                                            GCCATGCCGTTGACCTTCGCATCGTGCAGCCGGGGGATAATGTCGGGCCCAGGCGTAGGGTTAAACACCCAGGCCTGGGTCGCGACTCGACCCAGAGGCTCGCTGTGATGGTCGCCAATGTGGACGTCCGCGCGGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGAT  <  1:298576/236‑1                                                                                                                                                                                                                                            GCCATGCCGTTGACCTTCGCATCGTGCAGCCGGGGGATAATGTCGGGCCCAGGCGTAGGGTTAAACACCCAGGCCTGGGTCGCGACTCGACCCAGAGGCTCGCTGTGATGGTCGCCAATGTGGACGTCCGCGCGGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGAT  <  1:459174/236‑1                                                                                                                                                                                                                                            GCCATGCCGTTGACCTTCGCATCGTGCAGCCGGGGGATAATGTCGGGCCCAGGCGTAGGGTTAAACACCCAGGCCTGGGTCGCGACTCGACCCAGAGGCTCGCTGTGATGGTCGCCAATGTGGACGTCCGCGCGGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAG    <  2:273304/234‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TGGCGACCATCACAGCGAGCCTCTGGGTCGAGTCGCGACCCAGGCCTGGGTGTTTAACCCTACGCCTGGGCCCGACATTATCCCCCGGCTGCACGATGCGAAGGTCAACGGCATGGCCCAGCTCGGCATCAACATCAACGGGGTAGAAGAGGTCGAAGGCGTGCTATATGCGCAGTCGTGGTGGTGCAGGGCAGAATGATGGCCGGGGTTCCGCAGGCTTGGCTGGCCGAGCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4375476‑4375240 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgagctgggcCATGCCGTTGACCTTCGCATCGTGCAGCCGGGGGATAATGTCGGGCCCAGGCGTAGGGTTAAACACCCAGGCCTGGGTCGCGACTCGACCCAGAGGCTCGCTGTGATGGTCGCCAATGTGGACGTCCGCGCGGAGGGGCTGGACTTTCCGTAGGCGGTCTGAGGGCAAGGCCACGCCATGCTCGCGGCGTCGAACGAGAAGGAAGTACATGCGGCACCAATACTGTATAAAGAT  >  AE015451/4375362‑4375595

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.