| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 4565258 | 35 (0.880) | 4 (0.110) | 4/320 | NT | 11.1% | coding (501/1560 nt) | glgA | glycogen synthase |
| ? | AE015451 | = 4565305 | 31 (0.810) | coding (548/1560 nt) | glgA | glycogen synthase | |||||
TGCCCAGAACTGTACCAGCGCGACGGCACACCCTATGGTGCCAACAATGGCCGCGACTGGCCCGACAACCACATCCGCTTCGCCCGCCTGGGCCTGGCTGCCGCCGAAATCGCGGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/4565139‑4565258‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccggcCAGTCATGCGCGTGCACCACTTCCGGCGTCCAGTGGATCTTGCCTTCGCCGGCCGCGATTTCGGCGGCAGCCAGGCCCAGGCGGGCGAAGCGGATGTGGTTGTCGGGCCAGTCGCGGCCATTGTTGGCACCATAGGGTGTGCCGTCGCGCTGGTACAGTTCTGGGCAGATCAACACATAGATGACCAGGCCGTCGGCCATGTCC < AE015451/4565305‑4565102 TGCCCAGAACTGTACCAGCGCGACGGCAGACCCTATGGTGCCAACAATGGCCGCGACTGGCCCGACAACCACCTCCGCTTCGCCCGCCTGGGCCTGGCTGCCGCCGAAATCGCGGCC > 2:540905/1‑117 GCCCGCCTGGGCCTGGCTGCCGCCGAAATCGCGGCCGGCCAGTCATGCGCGTGCACCACTTCCGGCGTCCAGTGGATCTTGCCTTCGCCGGCCGCGATTTCGGCGGCAGCCAGGCCCAGGCGGGCGAAGCGGATGTGGTTGTCGGGCCAGTCGCGGCCATTGTTGGCACCATAGGGTGTGCCGTCGCGCTGGTACAGTTCTGGGCAGATCAACACATAGATGACCctgtctctta > 1:547025/1‑225 CCCGCCTGGGCCTGGCTGCCGCCGAAATCGCGGCCGGCCAGTCATGCGCGTGCACCACTTCCGGCGTCCAGTGGATCTTGCCTTCGCC < 1:394282/88‑1 CCCGCCTGGGCCTGGCTGCCGCCGAAATCGCGGCCGGCCAGTCATGCGCGTGCACCACTTCCGGCGTCCAGTGGATCTTGCCTTCGCC > 2:394281/1‑88 GGGCCTGGCTGCCGCCGAAATCGCGGCCGGCCAGTCATGCGCGTGCACCACTTCCGGCGTCCAGTGGATCTTGCCTTCGCCGGCCGCGATTTCGGCGGCAGCCAGGCCCAGGCGGGC > 2:581337/1‑117 CGCGGCCGGCCAGTCATGCGCGTGCACCACTTCCGGGGTCCGGTGGATCTTGCCTTCGCCGGCCGCGATTTCGGCGGCAGCCAGGCCCAGGCGGGCGAAGCGGATGTGGTTGTCGGGCCAGTCGCGGCCATTGTTGGCACCATAGGGTGTGCCGTCGCGCTGGTACAGTTCTGGGCAGATCA < 2:547024/182‑1 GGCCAGTCATGCGCGTGCACCACTTCCGGCGTCCAGTGGATCTTGCCTTCGCCGGCCGCGATTTCGGCGGCAGCCAGGCCCAGGCGGGCGAAGCGGATGTGGTTGTCGGGCCAGTCGCGGCCATTGTTGGCACCATAGGGTGTGCCGTCGCGCTGGTACAGTTCTGGGCAGATCAACACATAGATGACCAGGCCGTCGGCCATGTCC > 1:425465/1‑207 GGCCAGTCATGCGCGTGCACCACTTCCGGCGTCCAGTGGATCTTGCCTTCGCCGGCCGCGATTTCGGCGGCAGCCAGGCCCACGCGGGCGAAGCGGATGTGGTT > 2:20807/1‑104 GGCCAGTCATGCGCGTGCACCACTTCCGGCGTCCAGTGGATCTTGCCTTCGCCGGCCGCGATTTCG > 1:161759/1‑66 GGCCAGTCATGCGCGTGCACCACTTCCGGCGTCCAGTGGATCTTGCCTTCGCCGGCCGCGATTTCG < 2:161759/66‑1 TGCCCAGAACTGTACCAGCGCGACGGCACACCCTATGGTGCCAACAATGGCCGCGACTGGCCCGACAACCACATCCGCTTCGCCCGCCTGGGCCTGGCTGCCGCCGAAATCGCGGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/4565139‑4565258‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccggcCAGTCATGCGCGTGCACCACTTCCGGCGTCCAGTGGATCTTGCCTTCGCCGGCCGCGATTTCGGCGGCAGCCAGGCCCAGGCGGGCGAAGCGGATGTGGTTGTCGGGCCAGTCGCGGCCATTGTTGGCACCATAGGGTGTGCCGTCGCGCTGGTACAGTTCTGGGCAGATCAACACATAGATGACCAGGCCGTCGGCCATGTCC < AE015451/4565305‑4565102 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |