New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4703646	43 (1.080)	3 (0.080)	3/320	NT	8.1%	coding (1518/1695 nt)	kdpA	potassium‑transporting ATPase A chain
	?	AE015451	= 4703753	27 (0.710)					coding (1411/1695 nt)	kdpA	potassium‑transporting ATPase A chain

GGTCTGGTCCTTGGCACTGTGCCGGCTATTCACTTCAGGAATGGGCATGTTCATGATCGGTCCTCAAAAACCCAAGCTAAGGTGTTCGGCGATTGGCCCAAGGGCCAGGGTCGGCAGGAAGGTCAGGCCACCGACCAGCAGGATGGTCACCAGCAGCAAGCCGGTGAACAGCGGGCCGTGAGTCGGGAAGCTGTTCTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4703406‑4703646 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccaacAACGGCTCGGCCTTTGCCGGGTTTGGCGCCAACACCGTGTACCACAACCTGATGATCGGCCTGGCCATGCTCATCGGCCGCTTCGGCTACATCCTGCCGATACTGGCGTTGGCCGGCAGCCTGGCGGCGAAAAAAAGCGCGCCGCTGGGGCAGAACAGCTTCCCGACTCACGGCCCGCTGTTCACCGGCTTGCTGCTGGTGACCATCCTGCTGGTCGGTGGCCTGACCTTC  <  AE015451/4703753‑4703523                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGTCTGGTCCTTGGCACTGTGCCGGCTATTCACTTCAGGAATGGGCATGTTCATGATCGGTCCTCAAAAACCCAAGCTAAGGTGTTCGGCGATTGGCCCAAGGGCCAGGGTCGGCAGGAAGGTCAGGCCACCGACCAGCAGGATGGTCACCAGCAGCAAGCCGGTGAACAGCGGGCCGTGAGTCGGGAAGCTGTTCTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCG                                                                                                                                                                                                                                               <  1:280938/235‑1                               CACTTCAGGAATGGGCATGTTCATGATCGGTCCTCAAAAACCCAAGCTAAGGTGTTCGGCGATTGGCCCAAGGGCCAGGGTCGGCAGGAAGGTCAGGCCACCGACCAGCAGGATGGTCACCAGCAGCAAGCCGGTGAACAGCGGGCCGTGAGTCGGGAAGCTGTTCTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACAACGGCTCGGCCTTTGCCGGG                                                                                                                                                                                                                    <  2:277932/232‑1                                                                                                                                                                                                    CTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACAACGGCTCGGCCTTTGCCG                                                                                                                                                                                                                      >  1:639726/1‑65                                                                                                                                                                                                    CTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACAACGGCTCGGCCTTTGCCG                                                                                                                                                                                                                      <  2:639725/65‑1                                                                                                                                                                                                                                              CAACAACGGCTCGGCCTTTGCCGGGTTTGGCGCCAACACCGTGTACCACAACCTGATGATCGGCCTGGCCATGCTCATCGGCCGCTTCGGCTACATCCTGCCGATACTGGCGTTGGCCGGCAGCCTGGCGGCGAAAAAAAGCGCGCCGCTGGGGCAGAACAGCTTCCCGACTCACGGCCCGCTGTTCACCGGCTTGCTGCTGGTGACCATCCTGCTGGTCGGTGGCCTGACCTTC  >  1:342364/1‑235                                                                                                                                                                                                                                              CAACAACGGCTCGGCCTTTGCCGGGTTTGGCGCCAACACCGTGTACCACAACCTGATGATCGGCCTGGCCATGCTCATCGGCCGCTTCGGCTACATCCTGCCGATACTGGCGTTGGCCGGCAGCCTGGCGGCGAAAAAAAGCGCGCCGCTGGGGCAGAACAGCTTCCCGACTCACGGCCCGCTGTTCACCGGCTTGCTGCTGGTGACCATCCTGCTGGTCGGTGGCCTGACCTTC  >  1:447379/1‑235                                                                                                                                                                                                                                               AACAACGGCTCGGCCTTTGCCGGGTTTGGCGCCAACACCGTGTACCACAACCTGATGATCGGCCTGGCCATGCTCATCGGCCGCTTCGGCTACATCCTGCCGATACTGGCGTTGGCCGGCAGCCTGGCGGCGAAAAAAAGCGCGCCGCTGGGGCAGAA                                                                              >  2:258071/1‑158                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GGTCTGGTCCTTGGCACTGTGCCGGCTATTCACTTCAGGAATGGGCATGTTCATGATCGGTCCTCAAAAACCCAAGCTAAGGTGTTCGGCGATTGGCCCAAGGGCCAGGGTCGGCAGGAAGGTCAGGCCACCGACCAGCAGGATGGTCACCAGCAGCAAGCCGGTGAACAGCGGGCCGTGAGTCGGGAAGCTGTTCTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4703406‑4703646 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccaacAACGGCTCGGCCTTTGCCGGGTTTGGCGCCAACACCGTGTACCACAACCTGATGATCGGCCTGGCCATGCTCATCGGCCGCTTCGGCTACATCCTGCCGATACTGGCGTTGGCCGGCAGCCTGGCGGCGAAAAAAAGCGCGCCGCTGGGGCAGAACAGCTTCCCGACTCACGGCCCGCTGTTCACCGGCTTGCTGCTGGTGACCATCCTGCTGGTCGGTGGCCTGACCTTC  <  AE015451/4703753‑4703523

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.