New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4703646	43 (1.080)	3 (0.080)	3/320	NT	8.1%	coding (1518/1695 nt)	kdpA	potassium‑transporting ATPase A chain
	?	AE015451	= 4703753	27 (0.710)					coding (1411/1695 nt)	kdpA	potassium‑transporting ATPase A chain

GAAGGTCAGGCCACCGACCAGCAGGATGGTCACCAGCAGCAAGCCGGTGAACAGCGGGCCGTGAGTCGGGAAGCTGTTCTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCC  >  AE015451/4703523‑4703969                                                                                                                                                                                                                                       |                                                                                                                                                                                                                         gAAGGTCAGGCCACCGACCAGCAGGATGGTCACCAGCAGCAAGCCGGTGAACAGCGGGCCGTGAGTCGGGAAGCTGTTCTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTgttg                                                                                                                                                                                                                      >  1:447379‑M2/1‑231 (MQ=255) gAAGGTCAGGCCACCGACCAGCAGGATGGTCACCAGCAGCAAGCCGGTGAACAGCGGGCCGTGAGTCGGGAAGCTGTTCTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTgttg                                                                                                                                                                                                                      >  1:342364‑M2/1‑231 (MQ=255)          gCCACCGACCAGCAGGATGGTCACCAGCAGCAAGCCGGTGAACAGCGGGCCGTGAGTCGGGAAGCTGTTCTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGc                                                                                                                                                                                                               <  2:396614/233‑1 (MQ=255)            cACCGACCAGCAGGATGGTCACCAGCAGCAAGCCGGTGAACAGCGGGCCGTGAGTCGGGAAGCTGTTCTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAg                                                                                                                                                                                                          <  1:345255/236‑1 (MQ=255)                         gATGGTCACCAGCAGCAAGCCGGTGAACAGCGGGCCGTGAGTCGGGAAGCTGTTCTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGtat                                                                                                                                                                                                      <  2:546971/227‑1 (MQ=255)                          aTGGTCACCAGCAGCAAGCCGGTGAACAGCGGGCCGTGAGTCGGGAAGCTGTTCTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAg                                                                                                                                                                                            <  1:381011/236‑1 (MQ=255)                                                 gAACAGCGGGCCGTGAGTCGGGAAGCTGTTCTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCg                                                                                                                                                                                                            >  2:362740/1‑197 (MQ=255)                                                             gTGAGTCGGGAAGCTGTTCTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGccc                                                                                                                                                                                                             >  2:694234/1‑184 (MQ=255)                                                                      gAAGCTGTTCTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGcccc                                                                                                                                                  <  2:677226/234‑1 (MQ=255)                                                                         gCTGTTCTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGACTGCCGGCCAACGCAAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGc                                                                                                                                                                                                               <  2:405363/170‑1 (MQ=255)                                                                             ttCTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTgtt                                                                                                                                                                                                                       >  2:258071‑M2/1‑155 (MQ=255)                                                                                  ccccAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCccggcc                                                                                                                                              <  2:295362/226‑1 (MQ=255)                                                                                    ccAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAg                                                                                                                                                                                                          <  2:22494/164‑1 (MQ=255)                                                                                                                             gCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCAt                                                                                         >  1:282494/1‑236 (MQ=255)                                                                                                                                          ggATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTg                                                                                                                                                             >  1:140296/1‑155 (MQ=255)                                                                                                                                                        cGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTg                                                              >  1:306021/1‑236 (MQ=255)                                                                                                                                                            cGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACt                                                          <  1:641518/236‑1 (MQ=255)                                                                                                                                                             gATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGTCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGcc                                                                                                                 >  1:401835/1‑180 (MQ=255)                                                                                                                                                                   cATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACg                                                     <  2:469529/234‑1 (MQ=255)                                                                                                                                                                              cGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCccggccgggc                                                                                                                                     <  1:395164/143‑1 (MQ=255)                                                                                                                                                                              cGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCccggccgggc                                                                                                                                     >  2:395163/1‑143 (MQ=255)                                                                                                                                                                                   atcaGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGa                                                                                                                        >  2:429731/1‑151 (MQ=255)                                                                                                                                                                                    tcaGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGgc                                                                                                                    >  2:225041/1‑154 (MQ=255)                                                                                                                                                                                    tcaGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGgc                                                                                                                    <  1:225041/154‑1 (MQ=255)                                                                                                                                                                                              gTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCg                        >  1:362897/1‑236 (MQ=255)                                                                                                                                                                                               tACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCgg                       >  1:383987/1‑236 (MQ=255)                                                                                                                                                                                                  acGGTGTTGGCGCCAACCCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCg                                                                                                                                                                                                 <  2:77329/63‑1 (MQ=255)                                                                                                                                                                                                    ggTGTGGGCGCCAAACCCGGCAGAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGcttc                                        <  1:100956/214‑1 (MQ=255)                                                                                                                                                                                                          ggCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGcc                                                 <  2:405380/199‑1 (MQ=255)                                                                                                                                                                                                                aaaCCCGGCAAGGGCCGGGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAACCCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTggcg                                                                                                                            <  2:189420/118‑1 (MQ=255)                                                                                                                                                                                                                   cccGGCAAAGGCCGAGCCGTTgttggccggcagcctggcggcgaaaaaaagcgcgccgctggggcagaacagcttcccgactcacggcccgctgttcaccggcttgctgctggtgaccatcctgctggtcggtggcctgaccttcctgccgaccctggcccttgggccaatcgccgaacaccttagcttgggtttttgaggaccgatcatgaacatgcccattcctgaagtg       <  2:277932‑M2/232‑212 (MQ=255)                                                                                                                                                                                                                   cccGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAgg                               >  2:534343/1‑208 (MQ=255)                                                                                                                                                                                                                     cGGCAAAGGCCGAGCCGTTgttggccggcagcctggcggcgaaaaaaagcgcgccgctggggcag                                                                                                                                                                            >  1:639726‑M2/1‑19 (MQ=255)                                                                                                                                                                                                                     cGGCAAAGGCCGAGCCGTTgttggccggcagcctggcggcgaaaaaaagcgcgccgctggggcag                                                                                                                                                                            <  2:639725‑M2/65‑47 (MQ=255)                                                                                                                                                                                                                     cGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAATTACCAGCACGCCAACCGGCATCACCCGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGccc  >  1:714083/1‑235 (MQ=255)                                                                                                                                                                                                                             gCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAAtcatca      <  1:141672/223‑1 (MQ=255)                                                                                                                                                                                                                                     gttgttGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAAtcatca      <  1:540915/215‑1 (MQ=255)                                                                                                                                                                                                                                       |                                                                                                                                                                                                                         GAAGGTCAGGCCACCGACCAGCAGGATGGTCACCAGCAGCAAGCCGGTGAACAGCGGGCCGTGAGTCGGGAAGCTGTTCTGCCCCAGCGGCGCGCTTTTTTTCGCCGCCAGGCTGCCGGCCAACGCCAGTATCGGCAGGATGTAGCCGAAGCGGCCGATGAGCATGGCCAGGCCGATCATCAGGTTGTGGTACACGGTGTTGGCGCCAAACCCGGCAAAGGCCGAGCCGTTGTTGGCCGAGCCCGAGGTATAGGCGTACAGCAACTGGCTGAAACCATGCGCCCCCGGGTTGGTGACCGCCCCGGCCGGGCCGGGCAGGCTGGCGGCGATGGCGCCAAGTACCAGCACGCCAACCGGCATCACCAGCAGGGTTGCCACCAGAAGCTGCACTTCACGGGCCTGCAGCTTCTTGCCCAGGTATTCCGGGGTACGGCCAATCATCAGCCC  >  AE015451/4703523‑4703969

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.